PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s0569.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 458aa MW: 51482.2 Da PI: 8.3752

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s0569.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.2	2.7e-52	71	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 l+pGfrFhPtdeelv +yL++kv gk++++ ++i+e+diyk+ePwdLp +k+k+++ ewyf+s dkky +g r nrat++gyWkatg+ Kaladp0011s0569.1.p 71 LAPGFRFHPTDEELVRYYLARKVCGKSCRI-DAISEADIYKMEPWDLPglSKMKSRDLEWYFYSALDKKYGNGARMNRATSKGYWKATGN 159 579*************************.99***********6448888999**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v++ ++ +vg+kktLvf+kgr p g++t+Wvmheyrl Kaladp0011s0569.1.p 160 DRSVKH-ESCTVGMKKTLVFHKGRPPGGKRTNWVMHEYRL 198 **.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-62	64	221	IPR003441	NAC domain
PROSITE profile	PS51005	56.146	71	221	IPR003441	NAC domain
Pfam	PF02365	9.1E-27	73	198	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MKNKTVRKAR TPFCLQSLFP REVSPDCLDT EASQSLRTLK FHRPSFRIRK PHKVTMICRE 60 NKPVSPPLPA LAPGFRFHPT DEELVRYYLA RKVCGKSCRI DAISEADIYK MEPWDLPGLS 120 KMKSRDLEWY FYSALDKKYG NGARMNRATS KGYWKATGND RSVKHESCTV GMKKTLVFHK 180 GRPPGGKRTN WVMHEYRLVD GELERLGIVK DGYVLCRVFQ KSGLGPPNGD QYASFDESQW 240 DDDKLVPGAE TGDEGLMSDE AEPRDGSSLE GNGQDEKNQD TQPEKTKDDL KERSFLGAAL 300 VLKNERNDTW SLPSIVRPKR PRYTGSDSSC NPVQNHSSSL PSDPSLSAKL ASPMADPADM 360 AARTLLEFPL LNAHDAKENP QPTPPSSSSR FDIASFNMPV HPSYLDLISN LQNEIHSVSA 420 ERENLRIEMM HAQAMIDVLQ SRVNLLLQEN EGLRRSA*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MKNKTVRKAR TPFCLQSLFP REVSPDCLDT EASQSLRTLK FHRPSFRIRK PHKVTMICRE  60
NKPVSPPLPA LAPGFRFHPT DEELVRYYLA RKVCGKSCRI DAISEADIYK MEPWDLPGLS  120
KMKSRDLEWY FYSALDKKYG NGARMNRATS KGYWKATGND RSVKHESCTV GMKKTLVFHK  180
GRPPGGKRTN WVMHEYRLVD GELERLGIVK DGYVLCRVFQ KSGLGPPNGD QYASFDESQW  240
DDDKLVPGAE TGDEGLMSDE AEPRDGSSLE GNGQDEKNQD TQPEKTKDDL KERSFLGAAL  300
VLKNERNDTW SLPSIVRPKR PRYTGSDSSC NPVQNHSSSL PSDPSLSAKL ASPMADPADM  360
AARTLLEFPL LNAHDAKENP QPTPPSSSSR FDIASFNMPV HPSYLDLISN LQNEIHSVSA  420
ERENLRIEMM HAQAMIDVLQ SRVNLLLQEN EGLRRSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-45	70	221	19	168	NAC domain-containing protein 19
3swm_B	2e-45	70	221	19	168	NAC domain-containing protein 19
3swm_C	2e-45	70	221	19	168	NAC domain-containing protein 19
3swm_D	2e-45	70	221	19	168	NAC domain-containing protein 19
3swp_A	2e-45	70	221	19	168	NAC domain-containing protein 19
3swp_B	2e-45	70	221	19	168	NAC domain-containing protein 19
3swp_C	2e-45	70	221	19	168	NAC domain-containing protein 19
3swp_D	2e-45	70	221	19	168	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00612	ChIP-seq	Transfer from AT3G10490	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009619467.1	1e-133	PREDICTED: NAC domain-containing protein 78-like
TrEMBL	A0A0V0I6Z3	1e-132	A0A0V0I6Z3_SOLCH; Putative NAC domain-containing protein 78-like
TrEMBL	M1D2G1	1e-132	M1D2G1_SOLTU; Uncharacterized protein
STRING	XP_009619467.1	1e-133	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.2	1e-104	NAC domain containing protein 52

Link Out ? help Back to Top
Phytozome	Kaladp0011s0569.1.p