PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0586.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21416 Da    PI: 9.9583
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0586.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.31.1e-192872145
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         k+ie++s   v+f+kRr g++ KA+ELS+LC++++a+iifs+ gk
  Kaladp0011s0586.1.p 28 KKIEDSSASVVSFCKRRLGLFNKASELSILCGVQIALIIFSHAGK 72
                         68****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.4792072IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-222080IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-202194IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-132242IPR002100Transcription factor, MADS-box
PfamPF003193.9E-192977IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-134257IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-135778IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MADLIPITPN TINHHEKKTK GRRSIAIKKI EDSSASVVSF CKRRLGLFNK ASELSILCGV  60
QIALIIFSHA GKKPYSFGHP SVESLVGQFF AQEKSNANFP SKGNLDLNLT PSKCAMIQKL  120
CAELTQIKDQ VKIAEKRGDE LNRMRDARKT ENWWMKPLNN MNLSELKECK KAMKELEAMI  180
PSSEISLDLA L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-32AGAMOUS-like 61