PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0708.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 367aa    MW: 41336.1 Da    PI: 7.1968
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0708.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028207226120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  n++ H+
  Kaladp0011s0708.1.p 207 FSCHLCFKTFNRYNNMQMHM 226
                          89*****************9 PP
2zf-C2H214.50.00011291313123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Kaladp0011s0708.1.p 291 FMCRKCGKAFAVRGDWRTHEKNC 313
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556207234IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-4207226IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-6273311No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5287311IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808291311IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MMNDNHPYYS NQFNNGFFYS SAPASSSSSQ SFTNPTIPAY INNNFYLSYF NNNLKNCYNF  60
NNSNSFTPHH CNQLPTPPPS PPLRQALPLL SLSPTRHKNI EQKQHHEADQ EMDHQQVMVE  120
DGDEVEDDGC LLSIDLQLGL PDICASSSAD LLNISSSISS SVDEGGVIIA DSSNCSGYES  180
TTPTTRLNKG QYWIPTPAQI LIGPTQFSCH LCFKTFNRYN NMQMHMWGHG SQYRRGPESL  240
RGTQPTAMLR LPCYCCSPGC RNNIDHPRAK PLKDFRTLQT HYKRKHGMKP FMCRKCGKAF  300
AVRGDWRTHE KNCGKLWYCT CGSDFKHKRS LKDHIKAFGN GHAAYGIDCF DQEDDEAALS  360
DIEQDS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384541.21e-149zinc finger protein WIP2-like
SwissprotQ8W0311e-129ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A498IPH81e-147A0A498IPH8_MALDO; Uncharacterized protein
STRINGXP_008384541.11e-148(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]