PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s0957.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family CO-like
Protein Properties Length: 513aa    MW: 57390.6 Da    PI: 7.7714
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s0957.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.1e-06163206441
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                           +C++++ +++ l C + ++ lC++C  ++H        H++++
  Kaladp0011s0957.1.p 163 LVCQRCHAQPAALQCIEERVSLCQSCDWTGHDAstsgaaHKRRN 206
                          68*****************************5477888888765 PP
2CCT57.74.2e-20455498144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a+lRYkeK+k RkFeK++rY sRK++A+ R+RvKGrFvk+ 
  Kaladp0011s0957.1.p 455 RSKAVLRYKEKKKMRKFEKTVRYVSRKERADIRKRVKGRFVKAG 498
                          889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.4E-9117164IPR000315B-box-type zinc finger
CDDcd000212.06E-7121164No hitNo description
PROSITE profilePS501198.873122164IPR000315B-box-type zinc finger
PROSITE profilePS501198.759160207IPR000315B-box-type zinc finger
CDDcd000210.00639164193No hitNo description
PROSITE profilePS5101714.684455497IPR010402CCT domain
PfamPF062036.6E-15455497IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSHHFFFLHS SFIFISISIR ARCLFLALFL SRFSFLSRAF VFTSAKSDPN PFTPQRGVER  60
FFRKAPPFSA RRASTSYITL SEAKDARKLP YLPFCQTRIA FIFFKKCSSG RDSVISIMGY  120
KCDFCCNRSS VVYCRSDDAC LCLDCDTSVH AANSLSRRHS RTLVCQRCHA QPAALQCIEE  180
RVSLCQSCDW TGHDASTSGA AHKRRNIKFY SDCPSAAELQ SMWSYDSESV SVSGSISIGE  240
HEMGLMSIAD GNVKQAKPST TEVDQLCNVN PDQVWNSSAQ DLDSSFSNAS HETEIVNTPQ  300
PKLSFLEAIN PTGDDDLFVD FDMDESELNL ENYEELFRVN FSQSEELLEN GGIDSLFEPR  360
NKSLTELNCH RTLASQKVAS AAQPGCSKAL SVDSMMTSKT EPVIHFKQRQ SSSTLSFSGD  420
GGGDFIDCGT SSMISLGEHP WCPSFQESPS PSTNRSKAVL RYKEKKKMRK FEKTVRYVSR  480
KERADIRKRV KGRFVKAGET YDYDPLSQTK SC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004303586.11e-140PREDICTED: zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-112COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2P5B6171e-138A0A2P5B617_PARAD; Zinc finger-domain containing protein
STRINGXP_004303586.11e-140(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.12e-80B-box type zinc finger protein with CCT domain