PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1015.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 991aa    MW: 110243 Da    PI: 8.728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1015.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012898920323
                          ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                          Cp   Cgk+F ++ +L +H r+H
  Kaladp0011s1015.2.p 898 CPvtGCGKTFFSHKYLLQHRRVH 920
                          9999*****************99 PP
2zf-C2H211.40.001956982123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                          y C    Cg++F+  s++ rH r+  H
  Kaladp0011s1015.2.p 956 YMCAepGCGQTFRFVSDFSRHKRKtgH 982
                          789999****************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023731.1E-14147IPR003347JmjC domain
PROSITE profilePS5118416.325164IPR003347JmjC domain
SuperFamilySSF511973.02E-9980No hitNo description
SMARTSM0035526873895IPR015880Zinc finger, C2H2-like
SMARTSM003550.23896920IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.05896925IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.1E-5898919IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280898920IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-6898932No hitNo description
Gene3DG3DSA:3.30.160.601.3E-8920948IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014926950IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.471926955IPR007087Zinc finger, C2H2
PROSITE patternPS000280928950IPR007087Zinc finger, C2H2
SuperFamilySSF576671.5E-9936981No hitNo description
Gene3DG3DSA:3.30.160.606.9E-9949979IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551.1956982IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845956987IPR007087Zinc finger, C2H2
PROSITE patternPS000280958982IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 991 aa     Download sequence    Send to blast
MSPEVFVKAG IPCCRLVQNP GEFVVTFPRA YHSGFSHGFN CGEASNIATP YWLAVAKEAA  60
VRRASINYPP MVSHFQLLYD LAFALCSSLP MGVHSQPRSS RLKQKRKGVG ETVVKQLFVE  120
DIKESNRLLQ LLGEGLPVVL RPLSSAVFSI YSKSRIQCLL KSRSSSHLGL CYQKETVTSI  180
RNNLATSDIN SGTNGRLPTV IGLPAVGSKF CSTFDGNSRS LPNESTEPQL STSSRWVTDF  240
ENSNAIQDNG ASDKKLFSCV TCGILCFSCV AIIQPAEVAA RYLMASDCSF FSDSENAAKK  300
TSEELADSGR GVNTLDHTYS SGWMGRRAHN GTSNHIEEEY QSDEANSDRE EQPRTTALDL  360
LASAYGNSSD SENDTRLDSD PVYADGPNFS KISSDSDFEC NDSDIRDPLQ ENDFRWESSP  420
RLHSEGETTR FHIADSDGEN HYRRAFQNRN STYDSPSFNL DKLASMGSNL ASLQSDKDSL  480
RMHVFCLEHA IEVKKKLKQI GGVNMLLLCH PDYPRVEAEA KSVQEELGLD HCWNDTAFRE  540
SSEDDERCMA AALESAEDVS SNGDWTVKLG INLFYSASLS RSPLYSKQMP YNSIVYKAFG  600
RVPPLEAPAK SDGHTKGNSR KKKIVLAGKW CGKPWMSNQV HPLLLPPPPA LEETQQEHLH  660
AHASAKTDAA DSDSIQPVKS SKARRDDSSA TTSTPLAGSK RQIVVYSRSN KKTKRAETGL  720
SVSASDGGDA DAGENLSNQQ AKLHVRSKHK IEGNKKPLEE ETRILYYSSK HVAKGDLKST  780
KETTSLRDLY KPNFKPFGAD LDDKREGGLS TRLRRRNTKP ELEHEGKVLV KKERKPNKTP  840
ANSKIEKVDA KPRKSKVSEA ARSRKKKDEE GEFQCDKEGC TMSFSLKQEL ALHKRDICPV  900
TGCGKTFFSH KYLLQHRRVH EDARPLKCPW KGCKMTFKWA WARTEHIRVH TGVRPYMCAE  960
PGCGQTFRFV SDFSRHKRKT GHSVKRNIKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-6587398923139Lysine-specific demethylase REF6
6a58_A5e-6587398923139Lysine-specific demethylase REF6
6a59_A5e-6587398923139Lysine-specific demethylase REF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010663055.10.0PREDICTED: lysine-specific demethylase REF6
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-158relative of early flowering 6