PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1026.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 553aa    MW: 60958.4 Da    PI: 6.5956
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1026.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.39.1e-1091755511374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.......sseelaalkl 83 
                          lv+lL++cAeav+ +d++ a+alL++l+ +a   g+++qR+a++f+++La r++  v+ l +    s+++          s++++  l+l
  Kaladp0011s1026.1.p 175 LVQLLIACAEAVACRDKSHASALLSELRAHAVVFGSSFQRVASCFVQGLADRMTLLVQPLGSNGFRSPATM-LglmegveSDKKAEGLSL 263
                          689****************************************************7777776554444432.235666556666666677 PP

                 GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerLak 167
                           +e++P ++f+h++aN+ Ilea+ege+ vH++D++++ Gl    QW  L+++La+R+ gpp  +l++T++g     ++++l+++g  L+ 
  Kaladp0011s1026.1.p 264 VYELCPQIQFGHFVANSSILEAFEGESSVHVVDLGMTLGLpgghQWRQLIHSLANRATGPPkgRLKVTAIGL----HAQKLQAIGGELEV 349
                          **********************************9997644444*************9999889********....99************ PP

                 GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                          +A++++v++ f+  + k le++++e++++ ++E+l+Vn+++qlh +++es    +   +vL+++ +l+Pk +v+veq+++hn++ Fl rf
  Kaladp0011s1026.1.p 350 YAHSMNVNMVFSG-INKCLENIRPEDFDIVEDEVLVVNSIFQLHCVVKESRGALN---SVLRIIHKLQPKTLVLVEQDSNHNGPFFLGRF 435
                          *************.7********************************88877777...8******************************* PP

                 GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                          +eal+yysa+fdsl+a lp+ +  r+k+E+++++++i+n+v+ceg er+erhe++ +Wr+r+++aGF pvp++  + +qak  +++vk  
  Kaladp0011s1026.1.p 436 MEALHYYSAIFDSLDAMLPKYDTRRAKMEQFYFAEQIKNIVSCEGPERVERHERVDQWRRRMSRAGFLPVPIK--MISQAKQWMARVKlC 523
                          ***********************************************************************96..6899*********99 PP

                 GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374
                          dg+++ ee+g+l+lgWk++p+v++S+W+
  Kaladp0011s1026.1.p 524 DGHTIVEEKGCLILGWKSKPIVAASCWK 551
                          ***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.126149532IPR005202Transcription factor GRAS
PfamPF035143.1E-106175551IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MANELAATNS FSEEISYHDD DDQFKALDLC LSALACYPYP FLPIPENSVA TSFSTTNNGN  60
AAAGATFLMP EEPGTGRDSK RLKRSFSVSE SLGSSDTNGC SSSYYGSASV EMSSRSLVRS  120
SSVTSLPRLH FRDHIWTYTQ RYLAAEAVEE AVSSFEAENG ISGEDHQGNK DGMRLVQLLI  180
ACAEAVACRD KSHASALLSE LRAHAVVFGS SFQRVASCFV QGLADRMTLL VQPLGSNGFR  240
SPATMLGLME GVESDKKAEG LSLVYELCPQ IQFGHFVANS SILEAFEGES SVHVVDLGMT  300
LGLPGGHQWR QLIHSLANRA TGPPKGRLKV TAIGLHAQKL QAIGGELEVY AHSMNVNMVF  360
SGINKCLENI RPEDFDIVED EVLVVNSIFQ LHCVVKESRG ALNSVLRIIH KLQPKTLVLV  420
EQDSNHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTRR AKMEQFYFAE QIKNIVSCEG  480
PERVERHERV DQWRRRMSRA GFLPVPIKMI SQAKQWMARV KLCDGHTIVE EKGCLILGWK  540
SKPIVAASCW KC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5516955013378Protein SCARECROW
5b3h_A3e-5516955012377Protein SCARECROW
5b3h_D3e-5516955012377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359535.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A192ADG00.0A0A192ADG0_PYRPY; DELLA protein RGL2
STRINGXP_009359535.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-78RGA-like 1