PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1158.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 402aa    MW: 44607.9 Da    PI: 4.4517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1158.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.3e-19132181255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp   gk  r++lg+f taeeAa+a++a +++++g
  Kaladp0011s1158.1.p 132 QYRGIRQRP-WGKWAAEIRDP---GKGVRVWLGTFNTAEEAARAYDAEARRIRG 181
                          69*******.**********8...545************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.49E-22132190IPR016177DNA-binding domain
PROSITE profilePS5103223.854132189IPR001471AP2/ERF domain
CDDcd000184.03E-32132190No hitNo description
Gene3DG3DSA:3.30.730.102.1E-32132190IPR001471AP2/ERF domain
SMARTSM003801.3E-38132195IPR001471AP2/ERF domain
PfamPF008478.5E-12133181IPR001471AP2/ERF domain
PRINTSPR003671.2E-11133144IPR001471AP2/ERF domain
PRINTSPR003671.2E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MCGGAIISDF IPSSKSRRLT AEFLWPDQQH KRKSGGWKGS SRFSRQLKPE IVDVADDDDD  60
DEEEEDDDDF EADFQGFKDE SDDEKGVEVE MRPFDFKATA AKSASSQASK SVKSAEFNGL  120
AEKSAKRKRK NQYRGIRQRP WGKWAAEIRD PGKGVRVWLG TFNTAEEAAR AYDAEARRIR  180
GKKAKVNFPE ESSPTAPKCA PKVNSESKRS KPSANIYGNR SFGSINKSDQ DYFNCLDLME  240
EKPLNQQYGY MSSFPAADQV APKSLSPSDA ANTYFTSDQG SNSFDCSDFG WGGARTPEIT  300
SILSATLEGD ESDFLEEANP TKKSKPVFDN EMPAEENPVE KLSEEFAAYE SQMKLFQIPY  360
DGSSWNASMD NMLNGEITQD AGNPMDLWSF DDASPTMGGI F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20132189563ATERF1
3gcc_A1e-20132189563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280975.11e-144ethylene-responsive transcription factor RAP2-12-like
TrEMBLD5L1391e-142D5L139_MALDO; AP2 domain class transcription factor
STRINGXP_008340186.11e-142(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-67related to AP2 2