PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1200.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 270aa    MW: 27904.2 Da    PI: 7.1421
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00043158180123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k F++   L  H r+H
  Kaladp0011s1200.1.p 158 HECAICHKQFPTGQALGGHKRRH 180
                          78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.29E-7106180No hitNo description
PROSITE profilePS501579.39106128IPR007087Zinc finger, C2H2
SMARTSM003550.02106128IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-13106130IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
PfamPF139121.5E-12157182IPR007087Zinc finger, C2H2
SMARTSM003550.3158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MAMEAVSHPP GYALDGFAKG KRSKRPRSEG GGEEMGLVSS LLALDEADVD LARSLMMLAS  60
GVVDEETVGE VKVGGGGGGG GGCLEVKDSV SMSAVETEST VKTASYRCTV CDKEFGSYQA  120
LGGHKASHRK LPASGVSFDT VAAASGVGGG GSGSGRVHEC AICHKQFPTG QALGGHKRRH  180
YEGVLGKQNQ HINHLQSLKN ATTSSGVTTA TTSDGAGSSL SHRGFDLNIP ALPDLWPVSR  240
FAAAEEEVES PHPARKPRVF LPNDVHIRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-31salt tolerance zinc finger