PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1201.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 172aa    MW: 18207.6 Da    PI: 9.2316
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1201.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.92.3e-262100194
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+ lr++C ++Cvl+p +      ++q +++ +++k+FG+s ++ +l+a+p+++++++++sl++eA+ r+ +Pv+Gavg+++++++
  Kaladp0011s1201.1.p   2 SCNGCRALRKGCGDSCVLRPSLqwiagHQAQVHATLFAAKFFGRSDLIGFLSAVPHDRKPALFQSLLFEACGRTINPVSGAVGLLSAGNW 91 
                          6*********************99887678889********************************************************* PP

               DUF260  86 qleqlkael 94 
                          +l+q++++ 
  Kaladp0011s1201.1.p  92 HLCQAAVDG 100
                          ****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.1711107IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-23298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSCNGCRALR KGCGDSCVLR PSLQWIAGHQ AQVHATLFAA KFFGRSDLIG FLSAVPHDRK  60
PALFQSLLFE ACGRTINPVS GAVGLLSAGN WHLCQAAVDG VLSGRTPQPL QESTTPTRTT  120
LNNTSSKTEG IERMRSANNA SSFTGSELLF SGNFHNQDSG GRGGKILNLF I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056214.16e-58LOB domain-containing protein 39-like
SwissprotQ9SN233e-50LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2R6RNC13e-55A0A2R6RNC1_ACTCH; LOB domain-containing protein
TrEMBLA0A498HRD96e-55A0A498HRD9_MALDO; Uncharacterized protein
STRINGXP_009354105.16e-56(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-52LOB domain-containing protein 38