PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1235.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 228aa    MW: 25831.6 Da    PI: 10.1884
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1235.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.6e-15129218198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v+   +l l  +f+++h  +  ++ ++tl de+ +++   +    ++ +  l++GWk+F+ a++L +gD +vF+l++ + f
  Kaladp0011s1235.1.p 129 FVKPMLPSHVSGGFWLGLNASFCKRHL-P-SRDSEVTLIDEDDEEYPTIY--LPRKTG--LSGGWKGFAVAHDLADGDALVFQLIKPTAF 212
                          89************************4.3.34559***************..555544..************************997888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v + r
  Kaladp0011s1235.1.p 213 --KVYITR 218
                          ..776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-23122221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-21122220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.68E-26127218No hitNo description
SMARTSM010191.1E-21129220IPR003340B3 DNA binding domain
PfamPF023624.0E-13129218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVQPEYEQSR QKQLEENRKR MEALNLPQLS QALRQFSPGL KTPPMKQRKP RTLEKKMVPV  60
RRSDRLSGKP GPVYLEVDVD RYDRVTIPRR VSKARDLSNR VYASEEERSY SIKRAEEVQA  120
ALDATHPSFV KPMLPSHVSG GFWLGLNASF CKRHLPSRDS EVTLIDEDDE EYPTIYLPRK  180
TGLSGGWKGF AVAHDLADGD ALVFQLIKPT AFKVYITRAS GFKKTAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520114.17e-98PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ44e-76Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A2P5ASS86e-95A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRINGXP_010520114.13e-97(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-78B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]