PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0011s1252.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 613aa MW: 71741.8 Da PI: 8.4322

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0011s1252.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.2	2.1e-21	54	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++G s+r++k+++++ + + t+r+fvCskeg+++ +k++ k++ +r+ trtgC+a ++ + +++g++ v++ e eH+H+++ Kaladp0011s1252.1.p 54 LYNDYARRIGLSIRRAKQRYRRGESSLTMRQFVCSKEGTKNAKKES--KRSYSRNITRTGCQAFIQFSIDQEGRYTVQRHEMEHTHDFS 140 6**************************************99988..9999********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-18	54	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.6E-30	261	354	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.778	516	554	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MVDMSTFKKS DMLESEVPGN TDESIRNQRA KFFEAKNSEL IGLVVESEED AYALYNDYAR 60 RIGLSIRRAK QRYRRGESSL TMRQFVCSKE GTKNAKKESK RSYSRNITRT GCQAFIQFSI 120 DQEGRYTVQR HEMEHTHDFS DIRQRHLMRS QRSISDEQIE LLKSFRKCGI KLSDAIRFLK 180 CQFGGSPNIG FINIDAYNAL ANPECKTFNG SYAKNLIEIF KERQENEDDF YNFDLDEDGR 240 LCGYFWRDGI MKKDYDLFGL VVHDTTYRTN KYDMVCGPFV GMNQHTNNVM FGCGFIINER 300 VESFVWLFQS FLKSMGDKAP ITIMTDESAA MAAGIKKVFP TSKHRLCIWH IIKNSKERII 360 SLRKNDGFIH LFNHLLKGCD SEAEFNFYWQ RMITVYHCAD NPWIIKFYKT KEKWCGAFCK 420 EFFSGGILSS QRSETTNKSV SRRLNKLSCL CEFYYTFCDV VSEWRSNEMK FNYSNSNGIP 480 EMVVSNSNLL RHARDVYTRN IYKIFEDRFL DGIDMFRHYV RFSAETLLVE CTCKCFTQDC 540 LLCMHSLRVL NIHCVQRIPD AYILKRWRKD IRKDCQESDQ SLCTAKIHYE IANSYENRNT 600 FDTGTILVNK SV*

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MVDMSTFKKS DMLESEVPGN TDESIRNQRA KFFEAKNSEL IGLVVESEED AYALYNDYAR  60
RIGLSIRRAK QRYRRGESSL TMRQFVCSKE GTKNAKKESK RSYSRNITRT GCQAFIQFSI  120
DQEGRYTVQR HEMEHTHDFS DIRQRHLMRS QRSISDEQIE LLKSFRKCGI KLSDAIRFLK  180
CQFGGSPNIG FINIDAYNAL ANPECKTFNG SYAKNLIEIF KERQENEDDF YNFDLDEDGR  240
LCGYFWRDGI MKKDYDLFGL VVHDTTYRTN KYDMVCGPFV GMNQHTNNVM FGCGFIINER  300
VESFVWLFQS FLKSMGDKAP ITIMTDESAA MAAGIKKVFP TSKHRLCIWH IIKNSKERII  360
SLRKNDGFIH LFNHLLKGCD SEAEFNFYWQ RMITVYHCAD NPWIIKFYKT KEKWCGAFCK  420
EFFSGGILSS QRSETTNKSV SRRLNKLSCL CEFYYTFCDV VSEWRSNEMK FNYSNSNGIP  480
EMVVSNSNLL RHARDVYTRN IYKIFEDRFL DGIDMFRHYV RFSAETLLVE CTCKCFTQDC  540
LLCMHSLRVL NIHCVQRIPD AYILKRWRKD IRKDCQESDQ SLCTAKIHYE IANSYENRNT  600
FDTGTILVNK SV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166533.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019179493.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-88	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0011s1252.1.p