PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0011s1265.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 228aa    MW: 25878.7 Da    PI: 10.3539
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0011s1265.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15129218198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k ++ps+v+   +l l  +f+++h  +   + ++tl +e+ +++   +    ++ +  l++GWk+F+ a++L +gD +vF+l++++ f
  Kaladp0011s1265.2.p 129 FVKPMLPSHVSGGFWLGLNVSFCKRHLPS--HDSEVTLINEDDEEYPTIY--LPRKTG--LSGGWKGFAVAHDLADGDALVFQLIKSTAF 212
                          89************************423..3348***************..555544..*************************98888 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v + r
  Kaladp0011s1265.2.p 213 --KVYITR 218
                          ..777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.3E-21122220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-23122221IPR015300DNA-binding pseudobarrel domain
CDDcd100171.97E-25127218No hitNo description
PfamPF023625.6E-13129219IPR003340B3 DNA binding domain
SMARTSM010191.7E-21129220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.053129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVQPEYEQSR QKRLEENRKR MEALNLPQLS QALRQFSPGL KTPPMKQRKP RTLEKKMVPV  60
RRSDRLSGKP GPVYLEVDVA RYERVTIPRR ISKARDLSNR VYASEEERSY SIKRAEEVHA  120
ALDATHPSFV KPMLPSHVSG GFWLGLNVSF CKRHLPSHDS EVTLINEDDE EYPTIYLPRK  180
TGLSGGWKGF AVAHDLADGD ALVFQLIKST AFKVYITRAS GFKKTVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010520114.16e-97PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ41e-76Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A251REU13e-94A0A251REU1_PRUPE; Uncharacterized protein
STRINGXP_010520114.12e-96(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]