PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0012s0014.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 453aa    MW: 49411.8 Da    PI: 8.3568
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0012s0014.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-13305351455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Kaladp0012s0014.1.p 305 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYITDLQ 351
                          799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.8E-4051218IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.05E-14300355No hitNo description
PROSITE profilePS5088817.333301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-19301370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10305351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-18305369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-16307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MGDKFRVSDE ERAAVEAVVG AGASHFLTSS ASETGFRDLA ASSNCVDSSV HHALSRLVAG  60
DSDWNYLVFW RASRSKGNGS ALVWGDGHCG GANAQNPSLS EEEKLRREKV VRLIQKWFGK  120
SVNKNGLLSN LELFYLVSMC YSFSSESASG PGQVYKYSRA VWAVDKCQEQ YESRAHLAKL  180
AGLKTVVFVP VKEGVVEIGS VAAVAEEKKV LQMIEGLFGC PESVLPKIFG QDLSLGGSNS  240
RSMRISFSPK VEEGGGIGVS QFYGSTVSGQ GGGLGFEQFR DEEGDDRKPR KRGRKPANGR  300
EQPLNHVEAE RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAISYITDL QSKIRMLETE  360
KDAPKAQAQA VPEFEFQARQ DDAIVRVSHP LDAHPVSRVI KALRENQMTP GPEMCDVSIT  420
NNDMVVHTFS IRTQGGAAAE HVKEKLLAAL SK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-30299371274Transcription factor MYC2
5gnj_B6e-30299371274Transcription factor MYC2
5gnj_E6e-30299371274Transcription factor MYC2
5gnj_F6e-30299371274Transcription factor MYC2
5gnj_G6e-30299371274Transcription factor MYC2
5gnj_I6e-30299371274Transcription factor MYC2
5gnj_M6e-30299371274Transcription factor MYC2
5gnj_N6e-30299371274Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286294RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028107222.11e-151transcription factor bHLH3-like
SwissprotO234871e-136BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A2R6QU121e-149A0A2R6QU12_ACTCH; Transcription factor bHLH3 like
STRINGVIT_07s0141g01060.t011e-148(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-107bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]