PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0012s0069.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 677aa    MW: 74850.2 Da    PI: 5.1381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0012s0069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.11.8e-14477523455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kaladp0012s0069.1.p 477 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 523
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-5513196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.79473522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-19473541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-16476527No hitNo description
PfamPF000104.6E-12477522IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-18477540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17479528IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MAGVPLGTGG GRLQSSLQAS VQAIQWTYSL FWQLSPQNGN LVWADGYYNG AIKTRKTIQS  60
MEVSAEEASL QRSQQLRELF DSLSAGDASE APARRPSASL SPEDLTESEW FYLMCVSFSF  120
PLGVGLPGKA YARRQHVWLT GANEVESKVF SRAILAKSAR VQTVLCIPVA DGVVEFGSTE  180
MIQEDLGLVR HVKTFFHDYN RSQHAPPPKP ALSGHSTSNP ATSSQCFHSP PPFAGMSSNN  240
NHSNPGNNDE DEDEEEENEE PGGLDSEAGT GRVAGEVSEL MQMEISDLDI RVRSPEDASN  300
NLESDFNVLP ASRIQKNKDD GHFTTESYKI DSARRWALMQ NQMRTGGVHL LQPPPFSETQ  360
LLEDLTQEDS HYSHTVSSIL HHHQQPPLPE SFFSAEDLIL SADSAFAKWT LYGDQVAATT  420
TGGAGSQWLL KFILFTVPYL HGKYPEENEP CKSADMSEAA QQLKKGAGAP QEDMSVNHVL  480
AERRRREKLN ERFVILRSLV PFVTKMDKAS ILGDTIEYLK QLRRKIQDLE VKAKQMEVEQ  540
RSGLTSQDRT WSGTGSEKRK MRAVEVTGSP KPVTVVEPPP PPPPVELLGL MDANTVQVSI  600
IETDALVELQ CPYREALLLD VMMKLRDLRI EVTAVQSSVT DGSFVAELRA KVKENVNGKK  660
MKIAEVKRAI YQIIPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-22131979193Transcription factor MYC3
4rqw_B3e-22131979193Transcription factor MYC3
4rs9_A3e-22131979193Transcription factor MYC3
4yz6_A3e-22131979193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1481486ERRRRE
2482487RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.10.0basic helix-loop-helix protein A
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A1L5YQR70.0A0A1L5YQR7_LITCN; BHLH2
STRINGEOX947960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-87bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]