PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0012s0069.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 524aa    MW: 58165.4 Da    PI: 4.9008
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0012s0069.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14324370455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Kaladp0012s0069.4.p 324 NHVLAERRRREKLNERFVILRSLVPFV-----TKMDKASILGDTIEYLKQLR 370
                          7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.6E-11443IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.79320369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-19320388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-16323374No hitNo description
PfamPF000103.3E-12324369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-18324387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17326375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDDQSARVQT VLCIPVADGV VEFGSTEMIQ EDLGLVRHVK TFFHDYNRSQ HAPPPKPALS  60
GHSTSNPATS SQCFHSPPPF AGMSSNNNHS NPGNNDEDED EEEENEEPGG LDSEAGTGRV  120
AGEVSELMQM EISDLDIRVR SPEDASNNLE SDFNVLPASR IQKNKDDGHF TTESYKIDSA  180
RRWALMQNQM RTGGVHLLQP PPFSETQLLE DLTQEDSHYS HTVSSILHHH QQPPLPESFF  240
SAEDLILSAD SAFAKWTLYG DQVAATTTGG AGSQWLLKFI LFTVPYLHGK YPEENEPCKS  300
ADMSEAAQQL KKGAGAPQED MSVNHVLAER RRREKLNERF VILRSLVPFV TKMDKASILG  360
DTIEYLKQLR RKIQDLEVKA KQMEVEQRSG LTSQDRTWSG TGSEKRKMRA VEVTGSPKPV  420
TVVEPPPPPP PVELLGLMDA NTVQVSIIET DALVELQCPY REALLLDVMM KLRDLRIEVT  480
AVQSSVTDGS FVAELRAKVK ENVNGKKMKI AEVKRAIYQI IPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14323373757Transcription factor MYC2
5gnj_B2e-14323373757Transcription factor MYC2
5gnj_E2e-14323373757Transcription factor MYC2
5gnj_F2e-14323373757Transcription factor MYC2
5gnj_G2e-14323373757Transcription factor MYC2
5gnj_I2e-14323373757Transcription factor MYC2
5gnj_M2e-14323373757Transcription factor MYC2
5gnj_N2e-14323373757Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328333ERRRRE
2329334RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279540.11e-159basic helix-loop-helix protein A
SwissprotE3SXU41e-133BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A0C7DWA51e-163A0A0C7DWA5_9MAGN; BHLH3 protein (Fragment)
STRINGEOX947961e-158(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-53bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]