PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0013s0026.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 628aa    MW: 69657.4 Da    PI: 7.3405
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0013s0026.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.16.9e-16311370155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Kaladp0013s0026.2.p 311 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 370
                          78*******************988886678446*************************98 PP
2AP243.29.5e-14413464155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+ ++ a+ k++g
  Kaladp0013s0026.2.p 413 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAESYDIAAIKFRG 464
                          57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-16311380IPR016177DNA-binding domain
PfamPF008471.1E-12311370IPR001471AP2/ERF domain
CDDcd000183.71E-22311379No hitNo description
SMARTSM003802.1E-29312384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-16312379IPR001471AP2/ERF domain
PROSITE profilePS5103219.137312378IPR001471AP2/ERF domain
PRINTSPR003672.1E-5313324IPR001471AP2/ERF domain
PfamPF008471.1E-8413464IPR001471AP2/ERF domain
CDDcd000181.93E-24413474No hitNo description
SuperFamilySSF541712.09E-16413473IPR016177DNA-binding domain
SMARTSM003801.9E-33414478IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-17414472IPR001471AP2/ERF domain
PROSITE profilePS5103218.624414472IPR001471AP2/ERF domain
PRINTSPR003672.1E-5454474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MKCSMSNDNT STAPNINHSS WLGFSLAPNM TSQLPLHSHH HHQPMPSAPP TLPSSYFHSL  60
PNLDASRTCY GHQDGDYSSG VAAMPLNSDG SLCIMGATSR STVSQVTAPA PAPKLEDFFG  120
GGTMGNHQTM GSHQCEANDR EAMALSLDSI YYQQQTTDQE TSNLQFLINL QDGIRPQQTE  180
IQHYPLHYYN YMTHDSFITT QDDKIKETHD DTCSIQLPSS LGSDFYYGLK NCSADNAMGD  240
KVSHVGFGDL QALTLSMSPG SQSSNASSSQ RVPHPAMEPL GLDSKKRGVE KVNQKQIVHR  300
KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCKKEGQS RKGRQVYLGG YDMEEKAARA  360
YDLAALKYWG SSTHINFPVE NYQQELEVMK NMSRQEYVAH LRRKSSGFSR GASIYRGVTR  420
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAESYDIAAI KFRGVSAVTN FDITRYNVER  480
IMESSTLLPS EQARRSNVPE PVVTADASNQ DQRLINTESP SIASLGSQNN SESMSFHQMP  540
PHPTTYQKPQ PLLYSAMTIS ESDKMANYMS NASSQVTSLS NSREHSPDKT NSLPMVFGMH  600
SLSASKFLAS PKLPMPQMPG FAWTDAA*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028059568.10.0AP2-like ethylene-responsive transcription factor ANT isoform X1
TrEMBLA0A411EWL90.0A0A411EWL9_CAMSI; AINTEGUMEN-LIKE protein
STRINGVIT_07s0151g00440.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-133AP2 family protein