PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0014s0013.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

HD-ZIP

Protein Properties

Length: 254aa MW: 28696.1 Da PI: 6.3488

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0014s0013.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	95	149	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++R++++++ql++Le+ F+++ ++ +++ LA++l+L+ rqV +WFqNrRa+ k Kaladp0014s0013.1.p 95 KSRRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVK 149 79***************************************************88 PP
2	HD-ZIP_I/II	102.9	2.7e-33	97	186	3	92
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +rr+s++q+k+LE+sF+ee kL p +Kv+lareL+l+prqva+WFqnrRAR+k+k+lEk y+ L+++++ l e+++L++ev+ L++ lk Kaladp0014s0013.1.p 97 RRRISADQLKTLEKSFQEEAKLRPAKKVSLARELNLEPRQVAIWFQNRRARVKSKNLEKMYDELREQFNVLYLEKQKLQNEVHILQTLLK 186 89**********************************************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-19	69	152	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.11E-18	80	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.912	91	151	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	93	155	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-17	95	149	IPR001356	Homeobox domain
CDD	cd00086	1.97E-16	95	152	No hit	No description
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MHSPQETGNP SQPDMEWSLP LAEANPSSSA NLPFSVSSAT NNHYPLMPYY PSFNHHHPHD 60 HSGFLMMETA ASPEMETREI TDMESSGNRQ SEEAKSRRRI SADQLKTLEK SFQEEAKLRP 120 AKKVSLAREL NLEPRQVAIW FQNRRARVKS KNLEKMYDEL REQFNVLYLE KQKLQNEVHI 180 LQTLLKRQVC CNQHVSTYEE ISVDNTSATA ALPAPPLADF YSVGEAGERF QTPHGLPCTQ 240 GTPAWAAQLP PEP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-32	homeobox 51

Link Out ? help Back to Top
Phytozome	Kaladp0014s0013.1.p