PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0014s0039.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 204aa    MW: 22223 Da    PI: 7.327
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0014s0039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00063108130123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +Cg  F +   L  H+r+H
  Kaladp0014s0039.1.p 108 HECAICGAEFASGQALGGHMRRH 130
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.17E-84164No hitNo description
PfamPF139123.6E-124166IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5754269IPR007087Zinc finger, C2H2
SMARTSM003550.194264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SuperFamilySSF576678.17E-8103130No hitNo description
PfamPF139128.4E-12107131IPR007087Zinc finger, C2H2
SMARTSM003550.093108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473108135IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MVVSICFMLA HSLTHSNYNC YSSRTCITYI YPAKEWEGRG VYECKTCNRS FHSFQALGGH  60
RTSHKKPRIT THDETPLVSK SPHMGVNVPV PTIAALQLGS RTAKTRVHEC AICGAEFASG  120
QALGGHMRRH RVTNSPLETS TTETKVAAAE DGVRITLSLL APPAPEEASS RSDHNELLSL  180
DLNLPAASSS EEDETRTLVD CHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014493277.12e-36zinc finger protein AZF2
TrEMBLA0A1S3THP55e-35A0A1S3THP5_VIGRR; zinc finger protein AZF2
STRINGXP_010510676.13e-33(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-35C2H2 family protein