PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0015s0073.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 154aa    MW: 16527.7 Da    PI: 9.5603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0015s0073.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.5e-161764355
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr  ++ g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +l+g
  Kaladp0015s0073.1.p 17 YRGVR--SRGGKWVCEIREPRK---TSRIWLGTFPKPEMAAAAYDVAAIALKG 64
                         9***6..679*********843...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.3E-271678IPR001471AP2/ERF domain
PROSITE profilePS5103219.5851672IPR001471AP2/ERF domain
PfamPF008471.9E-91764IPR001471AP2/ERF domain
CDDcd000181.63E-141774No hitNo description
Gene3DG3DSA:3.30.730.109.2E-281774IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-181774IPR016177DNA-binding domain
PRINTSPR003672.5E-71728IPR001471AP2/ERF domain
PRINTSPR003672.5E-75474IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MAAPNGAPCK PDQPFSYRGV RSRGGKWVCE IREPRKTSRI WLGTFPKPEM AAAAYDVAAI  60
ALKGKEAILN FPDSARSYPV PVTPSPADIR VAAAAAAAKK QEETSSSQLQ GLWPHPMEHH  120
VNQINHLATE AYGAEVENGC VRSGSHARRH AFG*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515795.16e-37ethylene-responsive transcription factor ERF026-like
SwissprotQ391272e-31TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A1S2Z6751e-35A0A1S2Z675_CICAR; ethylene-responsive transcription factor ERF026-like
STRINGXP_004515795.12e-36(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.18e-26ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]