PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0016s0052.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

ARF

Protein Properties

Length: 843aa MW: 94240.7 Da PI: 6.3073

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0016s0052.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.1	7.1e-23	148	249	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ +W++++i+r++++r++l++GW+ Fv++++L +gD ++F Kaladp0016s0052.1.p 148 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHKTEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL- 235 99***************************63.4445569********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+v+v+r+ Kaladp0016s0052.1.p 236 -RGENGELRVGVRRA 249 .449999***996 PP
2	Auxin_resp	121.7	5.4e-40	274	356	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r+sGtvvg++d+dp rW++SkWr+Lk Kaladp0016s0052.1.p 274 AWHAISTGTMFTVFYKPRTSPTEFIVPYDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFSGTVVGIEDADPRRWRDSKWRCLK 356 89*******************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.3E-41	144	263	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.44E-40	144	277	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.04E-20	146	248	No hit	No description
SMART	SM01019	9.6E-22	148	250	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.209	148	250	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-20	148	249	IPR003340	B3 DNA binding domain
Pfam	PF06507	5.5E-37	274	356	IPR010525	Auxin response factor
Pfam	PF02309	2.3E-10	719	813	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	23.418	722	815	IPR000270	PB1 domain
SuperFamily	SSF54277	2.55E-10	724	799	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MATSEVRSGR GESFSSGHSE PHDVAASRNV ADDGRDDAED ALYTELWHAC AGPLVTVPQV 60 GEHVFYFPQG HIEQVEASTN KVAEQEMPVY DLPSKILCRV LDVRLMAEPV TDEVFAHVVL 120 VPERNQDENA VKKEPPQPPK PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS 180 KQPPTQELVA KDLHKTEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG 240 ELRVGVRRAM RQQGNIPSSV ISSHSMHLGV LASAWHAIST GTMFTVFYKP RTSPTEFIVP 300 YDQYMESVKN NYSIGMRFKM RFEGEEAPEQ RFSGTVVGIE DADPRRWRDS KWRCLKVRWD 360 ETSTIHRPDR VSPWKIEPAL NPLALNPIPM PRPKRPRTNL LPLSPDSSVL TREGSSKVAL 420 EHPLTNGFLR VLQGQDISTL RANLAESNES ETIEKPRTWG LPIDEGRADV GSTPHRYLAE 480 NWLPLPRHET TYTDLLSGLA SHIESSHGYN LTFPDSAAAT SSIKKPSAED EDVLHETEDH 540 WSALPSELSL HLPESRMKYP VQGGYSLYQG HDSTVYGALE GRPMVNGHRA EHQPASWSMP 600 PPTYSTNIEW SRNSDPVTSS SPRQETSKPA DGSYKLFGIP LFGHHASSEP RMSAKNSADT 660 VLEGTNLLSP ECCLVDPGLK SGQPEDSNPR DIFTVSEQEK TFQNCQPISR EIQGKVQSGS 720 TRSCTKVHKQ GIALGRSVDL SKFNNYEQLK AELDRLFEFG GELLAARSNW LVVYTDDEGD 780 MMLAGDDPWQ EFCRMVQKIF IYTKDEVQKM NPRRTLGCSK IDGNPSSADA LDAVEVDISH 840 SL*

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MATSEVRSGR GESFSSGHSE PHDVAASRNV ADDGRDDAED ALYTELWHAC AGPLVTVPQV  60
GEHVFYFPQG HIEQVEASTN KVAEQEMPVY DLPSKILCRV LDVRLMAEPV TDEVFAHVVL  120
VPERNQDENA VKKEPPQPPK PRFHVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS  180
KQPPTQELVA KDLHKTEWRF RHIFRGQPRR HLLQSGWSVF VSSKRLVAGD AFIFLRGENG  240
ELRVGVRRAM RQQGNIPSSV ISSHSMHLGV LASAWHAIST GTMFTVFYKP RTSPTEFIVP  300
YDQYMESVKN NYSIGMRFKM RFEGEEAPEQ RFSGTVVGIE DADPRRWRDS KWRCLKVRWD  360
ETSTIHRPDR VSPWKIEPAL NPLALNPIPM PRPKRPRTNL LPLSPDSSVL TREGSSKVAL  420
EHPLTNGFLR VLQGQDISTL RANLAESNES ETIEKPRTWG LPIDEGRADV GSTPHRYLAE  480
NWLPLPRHET TYTDLLSGLA SHIESSHGYN LTFPDSAAAT SSIKKPSAED EDVLHETEDH  540
WSALPSELSL HLPESRMKYP VQGGYSLYQG HDSTVYGALE GRPMVNGHRA EHQPASWSMP  600
PPTYSTNIEW SRNSDPVTSS SPRQETSKPA DGSYKLFGIP LFGHHASSEP RMSAKNSADT  660
VLEGTNLLSP ECCLVDPGLK SGQPEDSNPR DIFTVSEQEK TFQNCQPISR EIQGKVQSGS  720
TRSCTKVHKQ GIALGRSVDL SKFNNYEQLK AELDRLFEFG GELLAARSNW LVVYTDDEGD  780
MMLAGDDPWQ EFCRMVQKIF IYTKDEVQKM NPRRTLGCSK IDGNPSSADA LDAVEVDISH  840
SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-174	24	378	1	354	Auxin response factor 1
4ldw_A	1e-174	24	378	1	354	Auxin response factor 1
4ldw_B	1e-174	24	378	1	354	Auxin response factor 1
4ldx_A	1e-174	24	378	1	354	Auxin response factor 1
4ldx_B	1e-174	24	378	1	354	Auxin response factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs) (By similarity). Could act as transcriptional activator or repressor. Involved in the control of fruit ripening process. Regulates expression of a number of ripening regulators, transcription factors, and ethylene biosynthesis and signaling components (PubMed:26716451, PubMed:26959229). May act as a transcriptional repressor of auxin-responsive genes (PubMed:26716451). {ECO:0000255\|RuleBase:RU004561, ECO:0000269\|PubMed:26716451, ECO:0000269\|PubMed:26959229}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By tomato fruit ripening. Expression is up-regulated by plant hormone auxin in tomato fruits. {ECO:0000269\|PubMed:26716451}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284543.1	0.0	PREDICTED: auxin response factor 2
Swissprot	K4DF01	0.0	ARF2B_SOLLC; Auxin response factor 2B
TrEMBL	D7SH69	0.0	D7SH69_VITVI; Auxin response factor
STRING	VIT_17s0000g00320.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Link Out ? help Back to Top
Phytozome	Kaladp0016s0052.1.p

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Breitel DA, et al. AUXIN RESPONSE FACTOR 2 Intersects Hormonal Signals in the Regulation of Tomato Fruit Ripening. PLoS Genet., 2016. 12(3): p. e1005903 [PMID:26959229]