PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0134.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 270aa    MW: 29848.6 Da    PI: 7.4428
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0134.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd+ l+ +v q+G g+W++ ++  g+ R++k+c++rw +yl
  Kaladp0016s0134.1.p 15 KGPWSLEEDQVLISYVSQHGHGRWRSLPKLAGLLRCGKSCRLRWTNYL 62
                         79******************************99************97 PP
2Myb_DNA-binding45.22.1e-1469113248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++T+eE++l  +++  lG++ W++Ia+ ++ gRt++++k+ w+++l
  Kaladp0016s0134.1.p  69 APFTEEEEKLVTQLHGILGNR-WTAIAAQLP-GRTDNEIKNLWNTHL 113
                          68*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-24665IPR009057Homeodomain-like
PROSITE profilePS5129423.8621066IPR017930Myb domain
SuperFamilySSF466892.38E-3012109IPR009057Homeodomain-like
SMARTSM007173.5E-131464IPR001005SANT/Myb domain
PfamPF002493.3E-151562IPR001005SANT/Myb domain
CDDcd001671.64E-101762No hitNo description
Gene3DG3DSA:1.10.10.603.9E-2466117IPR009057Homeodomain-like
PROSITE profilePS5129418.78667117IPR017930Myb domain
SMARTSM007174.1E-1367115IPR001005SANT/Myb domain
PfamPF002493.8E-1369113IPR001005SANT/Myb domain
CDDcd001672.28E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGKKRPCCEK NGLKKGPWSL EEDQVLISYV SQHGHGRWRS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRAP FTEEEEKLVT QLHGILGNRW TAIAAQLPGR TDNEIKNLWN THLRKRLLCM  120
GIDPLTHEPF ATSNGPALAP AAQWESARLE AEARLSRPRE SLQPGASSDH FLRLWNSEVG  180
EAFRLRARGA YVSSTSSIKG CCDSDMASTP AAKIGKGETC TSPTAASSSS DELDDSSDSA  240
LQLLTDYAFD DDMSFLADHI SDYYSFPSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-311311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661750.11e-111PREDICTED: myb-related protein 308
RefseqXP_010661751.11e-111PREDICTED: myb-related protein 308
SwissprotQ9M2D91e-103MYB17_ARATH; Transcription factor MYB17
TrEMBLD7UC601e-109D7UC60_VITVI; Uncharacterized protein
STRINGVIT_15s0046g03190.t011e-110(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-96myb domain protein 17