PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0167.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family SBP
Protein Properties Length: 257aa    MW: 28555.4 Da    PI: 9.2031
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0167.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.91.1e-41140216177
                          --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                  SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                          +Cq egC+adls+ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+ 
  Kaladp0016s0167.1.p 140 RCQTEGCTADLSNAKQYHRRHKVCEFHSKAATVITGGLTQRFCQQCSRFHLLTEFDNGKRSCRRRLAEHNRRRRKTP 216
                          6*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-35133202IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.565138215IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-38139217IPR004333Transcription factor, SBP-box
PfamPF031103.2E-31141214IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MLEYELWGTP SQMTLANSGH DPPAVASHHG VETFSTNASS SHPQSHNSAL PLDYAHQNAA  60
FWSSPNPYTF SYAPLHNQNA AFYSSANPNF FLKTEEGSLG TRLGLNLGRR TYFSAQDDGF  120
VSRLYHRGGL GGSGSVSAPR CQTEGCTADL SNAKQYHRRH KVCEFHSKAA TVITGGLTQR  180
FCQQCSRFHL LTEFDNGKRS CRRRLAEHNR RRRKTPRQPS SQGQLELQKS HMDNSSSETL  240
ASNYNDDNIN SFIKQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-33131214184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612203.18e-70squamosa promoter-binding-like protein 8
TrEMBLA0A2C9VVM12e-68A0A2C9VVM1_MANES; Uncharacterized protein
STRINGcassava4.1_023056m3e-69(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-46squamosa promoter binding protein-like 8