PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0222.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 548aa    MW: 61516.3 Da    PI: 5.7182
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0222.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13321365655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kaladp0016s0222.3.p 321 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYVKQLK 365
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-156177IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-14317369No hitNo description
SuperFamilySSF474591.83E-17318377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-11320364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-16321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-15322377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.392429507IPR002912ACT domain
CDDcd021160.00316430487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLNFMDRLRP LVGSKGWDYC AVWRLNQDQR FLELMGCCCA GADNEQDKLK FLVSPQLPCR  60
DTVFQHQRTE CCDHLCHLPS SVPLNSEFDL ISSNLFDSSK IRFQILTRVL FFCSIYAEAF  120
FSSQPRWLNV NLNTFSDPQA LAKEVVGTQV LIPVLGGLVE LFVAKQVAED KNVVDFIAAQ  180
CAIPLELDAL LTSSLQTRTN PAEENPQPGA ERNHASPSNS YQFHQPVANN TNQQACKMSS  240
PKGFSQQFNC DSAAENEPRN IDAMMMSGGS GSASDMPSQS KDGVRLEAGR SDSTSDCSDQ  300
IDDEDEAKCR RRNGKGQSKN LEAERRRRKK LNERLYKLRA LVPIISKLDK ASILVDAIDY  360
VKQLKKQVEE LRKELEQESD NKGDQTPADS VSEFVAPNTR NVAKPMGHEK VQQMEPQVEV  420
TPVDGSKFFI RVFCEQKPGG FVRLLEALSS LGLEVTNVNV TSYRMLVSNV FQVEMTRDDI  480
DDHHVAADDL RKSLLELTQI PVEAPWPDPL PDTTSNMPEY GVRADNHFPH HHALLNHHTS  540
PYHFHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309329RRRNGKGQSKNLEAERRRRKK
2323330ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841495.11e-140PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A2I4GCB41e-139A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEOX976291e-132(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-42bHLH family protein