PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0016s0222.4.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 536aa    MW: 59996.4 Da    PI: 5.7195
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0016s0222.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26e-13309353655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           e+ErrRR+++N+++ +Lr l+P  +      Kl+Ka+iL  A++Y+k+L+
  Kaladp0016s0222.4.p 309 LEAERRRRKKLNERLYKLRALVPIiS------KLDKASILVDAIDYVKQLK 353
                          589*********************66......*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-1717165IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.844303352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-14305357No hitNo description
SuperFamilySSF474591.7E-17306365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-11308352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-16309358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15310365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.392417495IPR002912ACT domain
CDDcd021160.00307418475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MKQSEVGARR SMLNFMDRLR PLVGSKGWDY CAVWRLNQDQ RFLELMGCCC AGADNEQDKL  60
KFLVSPQLPC RDTVFQHQRT ECCDHLCHLP SSVPLNSDIY AEAFFSSQPR WLNVNLNTFS  120
DPQALAKSVE QEVVGTQVLI PVLGGLVELF VAKQVAEDKN VVDFIAAQCA IPLELDALLT  180
SSLQTRTNPA EENPQPGAER NHASPSNSYQ FHQPVANNTN QQACKMSSPK GFSQQFNCDS  240
AAENEPRNID AMMMSGGSGS ASDMPSQSKD GVRLEAGRSD STSDCSDQID DEDEAKCRRR  300
NGKGQSKNLE AERRRRKKLN ERLYKLRALV PIISKLDKAS ILVDAIDYVK QLKKQVEELR  360
KELEQESDNK GDQTPADSVS EFVAPNTRNV AKPMGHEKVQ QMEPQVEVTP VDGSKFFIRV  420
FCEQKPGGFV RLLEALSSLG LEVTNVNVTS YRMLVSNVFQ VEMTRDDIDD HHVAADDLRK  480
SLLELTQIPV EAPWPDPLPD TTSNMPEYGV RADNHFPHHH ALLNHHTSPY HFHHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297317RRRNGKGQSKNLEAERRRRKK
2311318ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018841495.11e-145PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A2I4GCB41e-144A0A2I4GCB4_JUGRE; transcription factor ABORTED MICROSPORES-like isoform X2
STRINGEOX976291e-138(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.12e-47bHLH family protein