PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0017s0022.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 258aa    MW: 30334.4 Da    PI: 7.8216
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0017s0022.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.91.5e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nr+vtfskRr+g+ KKA+E+SvLCdaeva+iifs +gkl+eys+
  Kaladp0017s0022.1.p  9 KRIENKINRKVTFSKRRTGLVKKAHEISVLCDAEVALIIFSGDGKLFEYST 59
                         79***********************************************96 PP
2K-box92.95.3e-31821802100
                K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                          q+   ++l+++ +e  + e++kLk+++e Lqr++Rh+lGed+++Ls+ eLq+Le+qL+ slk+iR++Kn+l++e+i+elqkke+ +qe+n
  Kaladp0017s0022.1.p  82 QQMGASDLQQNPQEIKSMEYNKLKSRLELLQRNHRHYLGEDVDTLSMGELQNLEHQLHASLKRIRERKNHLMHESISELQKKERVMQEQN 171
                          55555668888888999************************************************************************* PP

                K-box  92 kaLrkklee 100
                          ++L++k +e
  Kaladp0017s0022.1.p 172 NMLTRKEKE 180
                          *****9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.104161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-33282IPR002100Transcription factor, MADS-box
CDDcd002651.60E-39279No hitNo description
PRINTSPR004041.4E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2590177IPR002487Transcription factor, K-box
PROSITE profilePS5129716.0794184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRRRVELKR IENKINRKVT FSKRRTGLVK KAHEISVLCD AEVALIIFSG DGKLFEYSTD  60
SCMEKILERY ERYSYAERQH YQQMGASDLQ QNPQEIKSME YNKLKSRLEL LQRNHRHYLG  120
EDVDTLSMGE LQNLEHQLHA SLKRIRERKN HLMHESISEL QKKERVMQEQ NNMLTRKEKE  180
MEKTLMVRQE EVHQWEHQHQ HNHGTASSSS FHLGQPVPCL NTGHTTYQVE ADGMMSQNEL  240
ELTLEPVYSY HLGLFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-21174173MEF2 CHIMERA
6byy_B2e-21174173MEF2 CHIMERA
6byy_C2e-21174173MEF2 CHIMERA
6byy_D2e-21174173MEF2 CHIMERA
6bz1_A2e-21174173MEF2 CHIMERA
6bz1_B2e-21174173MEF2 CHIMERA
6bz1_C2e-21174173MEF2 CHIMERA
6bz1_D2e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021623236.11e-110truncated transcription factor CAULIFLOWER A
SwissprotQ6E6S71e-108AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A182BPB81e-105A0A182BPB8_9ROSI; APETALA1
STRINGcassava4.1_029935m1e-110(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.14e-95MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]