PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0040.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23213.9 Da    PI: 10.3587
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.51e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl++y++
  Kaladp0018s0040.2.p  9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLFDYAT 59
                         79***********************************************86 PP
2K-box97.91.5e-3279171597
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          + ++++ + + s+  e+a+Lk++i++Lq++q h++GedL+sL+lkeLq+Le+qL+++lk+iR+kK++l++e+i+el+kk k+lq +n++L
  Kaladp0018s0040.2.p  79 QLVAADIESNGSWLLEHARLKARIDTLQKKQSHYMGEDLDSLTLKELQNLENQLDNALKHIRTKKSQLMFESISELKKKDKALQGQNTKL 168
                          55556667778999**************************************************************************** PP

                K-box  95 rkk 97 
                           k+
  Kaladp0018s0040.2.p 169 AKQ 171
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
CDDcd002652.45E-39276No hitNo description
SuperFamilySSF554556.93E-33288IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-30323IPR002100Transcription factor, MADS-box
PfamPF003196.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2687171IPR002487Transcription factor, K-box
PROSITE profilePS5129716.00888181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLFDYATD  60
SCMERILERY ERYSSAKTQL VAADIESNGS WLLEHARLKA RIDTLQKKQS HYMGEDLDSL  120
TLKELQNLEN QLDNALKHIR TKKSQLMFES ISELKKKDKA LQGQNTKLAK QPLQIKEKEK  180
SHAASPASLR APQICLEPLT VSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22185184MEF2 CHIMERA
6byy_B3e-22185184MEF2 CHIMERA
6byy_C3e-22185184MEF2 CHIMERA
6byy_D3e-22185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017973951.13e-98PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotQ6E6S71e-94AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLX5DS601e-97X5DS60_COFAR; FUL
STRINGEOY221352e-96(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]