PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0040.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22087.7 Da    PI: 10.2555
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0040.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.1e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+iifs++gkl++y++
  Kaladp0018s0040.3.p  9 KRIENKINRQVTFSKRRTGLLKKANEISVLCDAEVALIIFSTKGKLFDYAT 59
                         79***********************************************86 PP
2K-box99.35.5e-3379172598
                K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                          + ++++ + + s+  e+a+Lk++i++Lq++q h++GedL+sL+lkeLq+Le+qL+++lk+iR+kK++l++e+i+el+kk k+lq +n++L
  Kaladp0018s0040.3.p  79 QLVAADIESNGSWLLEHARLKARIDTLQKKQSHYMGEDLDSLTLKELQNLENQLDNALKHIRTKKSQLMFESISELKKKDKALQGQNTKL 168
                          55556667778999**************************************************************************** PP

                K-box  95 rkkl 98 
                           k++
  Kaladp0018s0040.3.p 169 AKQV 172
                          9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.043161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.89E-33288IPR002100Transcription factor, MADS-box
CDDcd002651.42E-39276No hitNo description
PRINTSPR004041.9E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014865.8E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.52488178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGRVQMKR IENKINRQVT FSKRRTGLLK KANEISVLCD AEVALIIFST KGKLFDYATD  60
SCMERILERY ERYSSAKTQL VAADIESNGS WLLEHARLKA RIDTLQKKQS HYMGEDLDSL  120
TLKELQNLEN QLDNALKHIR TKKSQLMFES ISELKKKDKA LQGQNTKLAK QVTFCLTNQL  180
QCLLRLFISL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-22185184MEF2 CHIMERA
6byy_B4e-22185184MEF2 CHIMERA
6byy_C4e-22185184MEF2 CHIMERA
6byy_D4e-22185184MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037634.29e-97PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2
RefseqXP_012080420.19e-97truncated transcription factor CAULIFLOWER A isoform X1
RefseqXP_017973951.15e-97PREDICTED: agamous-like MADS-box protein AGL8 homolog isoform X3
SwissprotQ6E6S76e-93AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A1S3YGF67e-96A0A1S3YGF6_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009625854.17e-96(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.17e-90MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]