PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0046.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 203aa MW: 23350.7 Da PI: 9.5551

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0046.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.2	6.2e-13	124	196	20	98
HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 k+ +++h + ++e+ ++tlede+g++ k+ s r l++GW+ F +++L +gD +vF+l++ ++f +v ++r Kaladp0018s0046.1.p 124 KPMVQSHAHMPKEDEMITLEDEDGNESPSKY--LADSTR--LSGGWRCFTLDHELVDGDALVFQLIRPTKF--KVYIIR 196 777888866677888**************..777655..***********************97777..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.94E-18	115	198	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.0E-14	117	198	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.65E-17	120	196	No hit	No description
SMART	SM01019	1.4E-11	122	198	IPR003340	B3 DNA binding domain
Pfam	PF02362	6.1E-11	124	196	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.375	140	198	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MVVSATSNYE KLRRQRLEEK KKRMEEVNLL NLSKSLSAAT PKSSPAKHRK PKSARKEVNL 60 SAVRRFRRMA GKSRPDYKEG MRLMLSREDL LIHVYASHES RMSAVERAEQ LESELGSEYP 120 CFVKPMVQSH AHMPKEDEMI TLEDEDGNES PSKYLADSTR LSGGWRCFTL DHELVDGDAL 180 VFQLIRPTKF KVYIIRVNEH EN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279758.1	1e-74	B3 domain-containing protein At3g19184-like isoform X2
Swissprot	Q1G3M3	1e-53	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	F6HQC1	2e-73	F6HQC1_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00620.t01	3e-74	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-46	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0018s0046.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]