PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0089.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 325aa    MW: 35333.3 Da    PI: 5.6339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0089.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3383e-1219107299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          +k + ps+ +    l+l+ kf+ +h   ++e+ +++lede+g+  + k+   kk     l++GW++F  a++L  gD+ vF+l+   ++ 
  Kaladp0018s0089.1.p  19 VKFMHPSSCSGGFSLSLSIKFC-QHL--PPEDCEVVLEDEEGQLTRTKYLAVKKA----LSAGWRGFSIAHQLLPGDVAVFQLVA-PCR- 99 
                          57888999999999********.664..335569***************655555....9**********************987.333. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                          ++v+++r+
  Kaladp0018s0089.1.p 100 MKVHIVRA 107
                          68888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-1712110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-1414110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1616106No hitNo description
SMARTSM010191.2E-918108IPR003340B3 DNA binding domain
PROSITE profilePS508639.36118108IPR003340B3 DNA binding domain
PfamPF023626.5E-1019107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVRAESIRAG LRPGLPSLVK FMHPSSCSGG FSLSLSIKFC QHLPPEDCEV VLEDEEGQLT  60
RTKYLAVKKA LSAGWRGFSI AHQLLPGDVA VFQLVAPCRM KVHIVRASSC PAGAAEVKNT  120
GNRQEADRPP GLAMVVYKED KQGNGSADVT TDECFNCSPA GSETIDGIRF SESNITFKEV  180
TSFQDFHIAV NGLIIDCEFS PDTRLKYYEL CKTRSMFLHE HLLEGINCKL AAGIIIETVN  240
IADAVQAAGP STPEEDVAVW NRTLEAVGGL GMSVEFLRER LSCQVGHVSE ADKRGDALQV  300
KLLEVQEAAR KFHAEIEALR RVDG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-18B3 family protein