PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0129.7.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 154aa MW: 17750.6 Da PI: 10.3589

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0129.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.2	2.7e-17	19	101	10	99
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + + +++p kf++ + +e s tl +sg sW+ k+ + + g+++l+ GW+eF k+n Lk ++++vF+++g+++f +v++f++ Kaladp0018s0129.7.p 19 SIDE-KMRIPPKFVNLIW--EELSSVATLVGPSGDSWSTKV--CHSEGHVYLKCGWQEFYKDNLLKGNEMLVFTYKGKMRF--HVQIFDT 101 3444.49*****6663..4567799**********..9****************************99999..***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	1.16E-15	9	100	No hit	No description
PROSITE profile	PS50863	12.675	9	102	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.42E-23	10	102	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	6.9E-22	10	102	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	8.6E-14	11	102	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.4E-15	12	101	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MRMGTCVGKR FFKLMFGDSI DEKMRIPPKF VNLIWEELSS VATLVGPSGD SWSTKVCHSE 60 GHVYLKCGWQ EFYKDNLLKG NEMLVFTYKG KMRFHVQIFD TSAVERMQVV VSKPDDKKDS 120 AVQKRKHDEK NDSTVPKRQR GRPRKHPISP PKF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	7e-17	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0018s0129.7.p