PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0156.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 176aa MW: 19644.8 Da PI: 4.168

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0156.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38	3e-12	16	98	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + +r+++ f+++ + ++ + ++l++ + + vk+ k g ++++ GW+eFv ngLk g f+vF++dg+ +f vk+f++ Kaladp0018s0156.1.p 16 NGARMRVCDAFLATLS-DEVIPERVVLRNCLQEAFAVKV--FKENGVVYFGVGWREFVVWNGLKLGYFLVFRYDGEGGF--DVKIFNN 98 4567888899997773.4467788*************..999999*************************98888..9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd10017	3.56E-13	5	97	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.4E-15	5	101	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.08E-15	5	101	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0017	7	99	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-10	14	98	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.812	39	99	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MGVKPEFFFV FMPLINGARM RVCDAFLATL SDEVIPERVV LRNCLQEAFA VKVFKENGVV 60 YFGVGWREFV VWNGLKLGYF LVFRYDGEGG FDVKIFNNSG CVDNGRDEAA DRDEEESSDD 120 DEEAEDESND SAADFSDSTY SETSEASGSG TRINTKKKNN IHPKRGIQVC DLIDF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-11	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0018s0156.1.p