PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0018s0301.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 416aa MW: 43775.5 Da PI: 8.9686

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0018s0301.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.7e-12	41	65	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ tGtCk+G++Ck++H++ Kaladp0018s0301.3.p 41 QPVCKYYMMTGTCKFGSSCKYHHPR 65 689********************96 PP
2	zf-CCCH	36.8	6.7e-12	84	109	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+CkyG +CkF+H++ Kaladp0018s0301.3.p 84 GEKECSYYVKTGQCKYGVTCKFHHPQ 109 7899********************97 PP
3	zf-CCCH	40.2	5.6e-13	250	276	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG CkyG++C+++H+p Kaladp0018s0301.3.p 250 PGQPECQYYMKTGDCKYGSSCRYHHPP 276 5789*********************97 PP
4	zf-CCCH	34	5.1e-11	296	319	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++C ffa++G CkyG+ Ck+ H+ Kaladp0018s0301.3.p 296 APPCIFFAQYGVCKYGSACKYDHS 319 689********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	16.126	38	66	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-7	38	65	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.05E-6	39	66	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-10	41	65	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	43	65	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.389	82	110	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	82	109	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.27E-6	84	110	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-9	84	109	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-4	88	108	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.389	249	277	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.8E-7	249	276	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.6E-10	251	276	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.4E-6	253	277	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-6	255	277	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.737	293	321	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-5	293	320	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	296	320	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-8	296	319	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.7E-4	298	319	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MMKCLTEFVG AANVRIMLSD CSQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK 60 YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP 120 ALGISPGPAP RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG 180 MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS 240 QKDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI 300 FFAQYGVCKY GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL 360 HQEIAAVSRK DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MMKCLTEFVG AANVRIMLSD CSQVVGALRL GGGEYPQRVG QPVCKYYMMT GTCKFGSSCK  60
YHHPRHGGGP HVSLNYLGYP LRPGEKECSY YVKTGQCKYG VTCKFHHPQP TNIPVTTASP  120
ALGISPGPAP RLYPQVQPSS ISGAQPYGVM PGNWQVARPP AMLPGPYIQG PYAPMFVPHG  180
MVPVPGWGHF PAHVSPASPT PQPAIGSSPL YGITQLSSSA PEYTGPYSTV SLSVGASSSS  240
QKDRGLPERP GQPECQYYMK TGDCKYGSSC RYHHPPELIR PKTTPEPVNL PIRPGAPPCI  300
FFAQYGVCKY GSACKYDHSS RTGSLSYSPS ASSLTDVPVA PLPVGSSTGT LAASSSSSDL  360
HQEIAAVSRK DSSPTPQISS SATPTSTSLS SPPPKSQPTP HSTGSTSSKE AHSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634959.1	1e-139	zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	1e-109	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A2P6QY68	1e-136	A0A2P6QY68_ROSCH; Putative transcription factor C3H family
STRING	VIT_05s0020g01650.t01	1e-135	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-101	C3H family protein

Link Out ? help Back to Top
Phytozome	Kaladp0018s0301.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]