PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0027.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 319aa    MW: 35466.2 Da    PI: 7.9657
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0027.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-14158203555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR+++N++f  L + +P +     kK++Ka++L++A++Y+k+Lq
  Kaladp0019s0027.1.p 158 HITAERNRREKLNQRFIALSSAIPGL-----KKMDKATVLQEATKYVKQLQ 203
                          8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.529153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17157216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-13158207No hitNo description
SuperFamilySSF474595.37E-17158216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-11158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDQHQNLANL WMVNSQADMS GAIIPTEAPF DDLQHSNYSL YAYQLPIVET AMNDFQINKN  60
PMEQLTTNIR GSYDVSTTSD ADAADAAIYL YSSVNPTGAA WPKQENHCYN NNRPSQFTNG  120
DYPVWNEIYS SMPGREVKGK AANAIGATTS RSSEVQDHIT AERNRREKLN QRFIALSSAI  180
PGLKKMDKAT VLQEATKYVK QLQERIKTLE KQTKSITMME SAVFVKKTLL VINDINKSGF  240
CNETSFSEKT LSDESLPVIE VRFCDKKVLI RVHCDRKKGA AEKILGEIAK LHLTVVNSNV  300
LAFGSSALDV TVLAKVKF*
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9T0729e-48BH025_ARATH; Transcription factor bHLH25
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-50bHLH family protein