PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0029.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 343aa    MW: 38632.8 Da    PI: 7.6268
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12158203555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L  ++P +     +K++Ka+ Le A++Y+k+Lq
  Kaladp0019s0029.1.p 158 HIKAERKRREKLSQRFIALSAVIPGL-----TKMDKATLLEDATKYVKQLQ 203
                          999**********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.875153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-16157214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9158203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-15158215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.89E-12158207No hitNo description
SMARTSM003531.1E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDQVIRIRYL PASQWMVNSH ADLSGSIPME PAFPDAFQPS YLLFDYPQPP IFGTTMNDFQ  60
SNNPVENLAT DTWRSRDVST SDSASDAVSF SYSAWPNPTG VAWPKREYHC YDNQVQQFPN  120
NEYTIWNENY VSKAGPEAKR KAIRNISAAT RSSEAEDHIK AERKRREKLS QRFIALSAVI  180
PGLTKMDKAT LLEDATKYVK QLQEQIKKLE KQTKSPTMIE SAVVVKKTLL EINDNNMPGF  240
SNETSFNERT LLDESLPEIE ARFCDRKVLI RVHCDRKKGV AEKILSEIGK LHMTVLNSSV  300
LAFGSSAIIV AVIAKVKFEF NATESHHNSI NTNVPNLVTT LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13157210861Transcription factor MYC2
5gnj_B3e-13157210861Transcription factor MYC2
5gnj_E3e-13157210861Transcription factor MYC2
5gnj_F3e-13157210861Transcription factor MYC2
5gnj_G3e-13157210861Transcription factor MYC2
5gnj_I3e-13157210861Transcription factor MYC2
5gnj_M3e-13157210861Transcription factor MYC2
5gnj_N3e-13157210861Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERKRRE
2162167RKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-41bHLH family protein