PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0030.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 336aa    MW: 37453.6 Da    PI: 6.791
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.2e-13154199555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++N++f  L  ++P +     +K++Ka++Le+A++++k+Lq
  Kaladp0019s0030.1.p 154 HIKAERKRREKLNQRFIALSAVIPGL-----TKMDKATVLEEATKFVKQLQ 199
                          999**********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.104149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-15154210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.50E-13154203No hitNo description
PfamPF000101.4E-10154199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDQDQIFTSQ WMVNSHADLS GPIPMEAAFP DALQHSNLLF DYPLPPIFGT TMNDFQSNNP  60
VEHLATDTWR SLDVSNSDSA ADAVSFLNSA WPNPTGVAWP KREYHCYDSQ VQQFPNNEYT  120
IWNENYGSKA GPEAKSKAIH NISAATRSSE AADHIKAERK RREKLNQRFI ALSAVIPGLT  180
KMDKATVLEE ATKFVKQLQE RIKKLEKQTK SGTVIESAVV VKKTLLVIND NNMPGFSNET  240
SFNERTLPDE SLPEIEVRFC HRKVLIRVHC DRKKGVAEKI LSEIGNLHMT VLNNSVFAFG  300
SSAINVVVIA KMNPECSMAE TELVKTLCVA LKSLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12150206561Transcription factor MYC2
5gnj_B2e-12150206561Transcription factor MYC2
5gnj_E2e-12150206561Transcription factor MYC2
5gnj_F2e-12150206561Transcription factor MYC2
5gnj_G2e-12150206561Transcription factor MYC2
5gnj_I2e-12150206561Transcription factor MYC2
5gnj_M2e-12150206561Transcription factor MYC2
5gnj_N2e-12150206561Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157162ERKRRE
2158163RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-49bHLH family protein