PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0109.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 169aa    MW: 18474.4 Da    PI: 8.4587
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0109.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.70.000124203955
                         TCHHHHHHHHHHHHHHH CS
                  HLH 39 sKaeiLekAveYIksLq 55
                         +Ka++L +A+eY+ksLq
  Kaladp0019s0109.1.p  4 DKASMLDEAIEYLKSLQ 20
                         7***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-6347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-5328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-4424No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQSDKASMLD EAIEYLKSLQ LQLQMMWMSS GMQPMMYPAV QHYMSRMGIG MGPTMPSMHN  60
AMQLPRVPLL EQPMSGATTP NQVNVCPTPV LTPLRYQNQL QNSTLAEQYA RYLGFQQMQA  120
ASQPVNMFNF GGAQAFPSNH TIPLPGAGNA PPIAGATMHD SLRGKLTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024184315.11e-57transcription factor PIF4-like
RefseqXP_024184316.11e-57transcription factor PIF4-like
RefseqXP_024184317.11e-57transcription factor PIF4-like
TrEMBLA0A2P6S0J73e-56A0A2P6S0J7_ROSCH; Putative transcription factor bHLH family
STRINGXP_010247965.11e-54(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.27e-14phytochrome interacting factor 4