PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0019s0135.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 22352.4 Da    PI: 10.406
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0019s0135.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-313079150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fss+g+lyey+
  Kaladp0019s0135.2.p 30 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 79
                         79***********************************************8 PP
2K-box1064.4e-3597191498
                K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          ss++ + e++++ +qqe++kL k+i+++q+ +Rh++Ge +++L++keL++Le++Lek+l+++RskKn+ll++ ie +qk+e elq++n++
  Kaladp0019s0135.2.p  97 SSNTGTVETNTQFYQQEASKLGKQIREMQNANRHIQGEAIGNLTVKELKNLESRLEKGLSRVRSKKNDLLFADIEFMQKREMELQNANMY 186
                          667778999********************************************************************************* PP

                K-box  94 Lrkkl 98 
                          Lr+k+
  Kaladp0019s0135.2.p 187 LRAKV 191
                          **996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.1932282IPR002100Transcription factor, MADS-box
CDDcd002651.29E-442399No hitNo description
SuperFamilySSF554557.46E-3423111IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332444IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PfamPF003196.9E-273178IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-334459IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-335980IPR002100Transcription factor, MADS-box
PfamPF014862.8E-26105191IPR002487Transcription factor, K-box
PROSITE profilePS5129713.472107195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MEFPNFHHNQ SSEGSSSLRK LAGRGKIEIK RIENTTNRQV TFCKRRNGLL KKAYELSVLC  60
DAEVALVVFS SRGRLYEYAN NSVRSTIERY KKASADSSNT GTVETNTQFY QQEASKLGKQ  120
IREMQNANRH IQGEAIGNLT VKELKNLESR LEKGLSRVRS KKNDLLFADI EFMQKREMEL  180
QNANMYLRAK VPISI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2123105287Myocyte-specific enhancer factor 2B
1tqe_Q1e-2123105287Myocyte-specific enhancer factor 2B
1tqe_R1e-2123105287Myocyte-specific enhancer factor 2B
1tqe_S1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_A1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_B1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_C1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_D1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_E1e-2123105287Myocyte-specific enhancer factor 2B
6c9l_F1e-2123105287Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898389.11e-103agamous-like MADS-box protein AGL1 isoform X2
SwissprotQ93XH42e-98MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLQ9XHM31e-103Q9XHM3_LIQST; AGAMOUS homolog (Fragment)
STRINGEMJ184631e-101(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.12e-99MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]