PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0020s0154.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

FAR1

Protein Properties

Length: 562aa MW: 66507.7 Da PI: 9.95

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0020s0154.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.2	1.8e-25	24	110	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA GF +r++ ++ks++++ei++ +fvC+keg + ++k++ k ++ e rtgCkak++++++ +++w+v+k+e eHnH+ Kaladp0020s0154.1.p 24 DFYNHYALYHGFGIRINGHTKSRTSKEIIRWQFVCNKEGLKLKDKRQLGKDVKSYREMRTGCKAKMEISLK-SDEWVVDKFEDEHNHS 110 6********************************************************************.99***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-23	24	110	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.804	414	452	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.5E-5	427	445	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.7E-6	427	454	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence Send to blast
MTNTQGQNTL ILGRKFSSKD EVYDFYNHYA LYHGFGIRIN GHTKSRTSKE IIRWQFVCNK 60 EGLKLKDKRQ LGKDVKSYRE MRTGCKAKME ISLKSDEWVV DKFEDEHNHS PTTPSKVMKH 120 RYHNKFHRTP VVKNQCTSLT KKLLMPLAVV TKWTLLQNNV QIYYGQRKKI IRNQMGVHYF 180 AIDLASDGSL KSVFWADGRF RLAYAQFEDV LVFDVTYRTN HFNLPFAPFV EHLHSLCARF 240 DDFGETYTNW QKRNTIEEFE LDWEIIKQKY SIAKGRWLDN MYNLRVFWVK VYLKDCFTAG 300 VTTSGRSESM NSYFDGYVNS NTMLNDFVKQ YDKAVEARRI KEEEEDFRTI ESHAVSLTNY 360 PVEEHVARLY TRNLFEIFKL EWKKSFDYIH KKSNKGFNFV ECLVGKYGLD VKYWRLVNYK 420 SDKDLSLKCT CCKFEMEGIL CKHILYIVRK KNLEVIPNQY FLPRWTIGAR YKNNMANNSS 480 SSNRQAGTGA SPLTIWSIQR KFSMILEIGR KSSSDLQLLE SVLDTYIERW EIRRLLIMLK 540 KMVNVKAMQM HHLFLRMINV R*

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence Send to blast

MTNTQGQNTL ILGRKFSSKD EVYDFYNHYA LYHGFGIRIN GHTKSRTSKE IIRWQFVCNK  60
EGLKLKDKRQ LGKDVKSYRE MRTGCKAKME ISLKSDEWVV DKFEDEHNHS PTTPSKVMKH  120
RYHNKFHRTP VVKNQCTSLT KKLLMPLAVV TKWTLLQNNV QIYYGQRKKI IRNQMGVHYF  180
AIDLASDGSL KSVFWADGRF RLAYAQFEDV LVFDVTYRTN HFNLPFAPFV EHLHSLCARF  240
DDFGETYTNW QKRNTIEEFE LDWEIIKQKY SIAKGRWLDN MYNLRVFWVK VYLKDCFTAG  300
VTTSGRSESM NSYFDGYVNS NTMLNDFVKQ YDKAVEARRI KEEEEDFRTI ESHAVSLTNY  360
PVEEHVARLY TRNLFEIFKL EWKKSFDYIH KKSNKGFNFV ECLVGKYGLD VKYWRLVNYK  420
SDKDLSLKCT CCKFEMEGIL CKHILYIVRK KNLEVIPNQY FLPRWTIGAR YKNNMANNSS  480
SSNRQAGTGA SPLTIWSIQR KFSMILEIGR KSSSDLQLLE SVLDTYIERW EIRRLLIMLK  540
KMVNVKAMQM HHLFLRMINV R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-40	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Kaladp0020s0154.1.p