PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0065.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 88aa    MW: 9775.02 Da    PI: 7.5123
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0065.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071155345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                         +WT+   +++  a + +  +    W ++a+ +g g++++++k ++ 
  Kaladp0022s0065.1.p 11 PWTARQNKKFEVALAVFSQEtpgKWQKVAEFVG-GKSEEEVKRHYE 55
                         89999999**99999999889999*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.902762IPR017884SANT domain
SMARTSM007172.7E-6860IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-121065IPR009057Homeodomain-like
CDDcd001672.03E-51158No hitNo description
PfamPF002491.0E-51155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-41159IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASMNCGSDS PWTARQNKKF EVALAVFSQE TPGKWQKVAE FVGGKSEEEV KRHYELLVKD  60
VWDIERGHLP LPKYKKASYG SSDAAEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-22175174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616919.13e-28PREDICTED: protein RADIALIS-like 6 isoform X1
RefseqXP_016444191.13e-28PREDICTED: protein RADIALIS-like 6
SwissprotF4JVB84e-27RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3XW747e-27A0A1S3XW74_TOBAC; protein RADIALIS-like 6
STRINGXP_009616919.11e-27(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-29RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]