PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0022s0085.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 293aa MW: 33542.4 Da PI: 10.1804

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0022s0085.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.3	1.4e-18	131	220	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l lp +f+++h+ k e+ ++tlede+g++ k+ ++++ l++GW++F+ +++L +gD +vF+l++ ++f Kaladp0022s0085.1.p 131 FVKPMLQSHVTGGFWLGLPQRFCKAHMPK--EDEMMTLEDEDGNESPSKYLADRTG----LSGGWRGFALDHELVDGDALVFQLIRPTKF 214 89**********************855..5569***********555555....***********************97777 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Kaladp0022s0085.1.p 215 --KVYIIR 220 ..888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.7E-23	124	222	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.35E-25	124	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.23E-29	129	220	No hit	No description
SMART	SM01019	1.3E-24	131	222	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-17	131	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.069	131	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MVAAATSNYE ELRRQRLEEN KKRMEELNLL NLSKSLSAAT PKPSPAKKQW KPKSARKEVD 60 LSAVRRSSRT ADRPQPDYKE GMIEPLGSLR RGPHRRRDLL NRVYASDEFR MYAVQRAEQL 120 ESELGSEFPC FVKPMLQSHV TGGFWLGLPQ RFCKAHMPKE DEMMTLEDED GNESPSKYLA 180 DRTGLSGGWR GFALDHELVD GDALVFQLIR PTKFKVYIIR VNEHENGDES NEDVADEDGN 240 DVVLLKSVPK AKPRKVAKPR KVAEPSPGTR RSRRKKSSMM RMRMMTQMMI FF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021279750.1	1e-108	B3 domain-containing protein At3g19184-like isoform X1
Refseq	XP_021279758.1	1e-108	B3 domain-containing protein At3g19184-like isoform X2
Swissprot	Q1G3M3	2e-88	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	F6HQC1	1e-105	F6HQC1_VITVI; Uncharacterized protein
STRING	VIT_03s0063g00620.t01	1e-106	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	7e-85	B3 family protein

Link Out ? help Back to Top
Phytozome	Kaladp0022s0085.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]