PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0086.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 205aa    MW: 21554.2 Da    PI: 8.6797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0086.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.8e-18103151355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+W+AeIrdp+    r  r++lg+f ta+eAa a+++a+ k++g
  Kaladp0022s0086.1.p 103 YRGVRQRP-SGKWAAEIRDPR----ReMRVWLGTFETAQEAALAYDRAAVKFHG 151
                          9*******.7*********82....47************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575130No hitNo description
PROSITE profilePS5103222.932102159IPR001471AP2/ERF domain
PfamPF008473.7E-12102151IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-21102159IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-30102158IPR001471AP2/ERF domain
SMARTSM003802.6E-34102165IPR001471AP2/ERF domain
CDDcd000189.26E-29103158No hitNo description
PRINTSPR003671.0E-9103114IPR001471AP2/ERF domain
PRINTSPR003671.0E-9125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MTRLTPEQEM AAMVASLTHV VTGGYGSTSC NSGPFSAADS ACQICKVVRE CLGCGLSDFA  60
PPFDSGGQPV NEGSAPEVYG EGRNEAGNNC GSKKKRKKKN NNYRGVRQRP SGKWAAEIRD  120
PRREMRVWLG TFETAQEAAL AYDRAAVKFH GPRAKLNFIY PDTSATHCRS APPIAAQAVV  180
IPDQGASANA AEGGAGDGIM GMRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2199158262ATERF1
3gcc_A5e-2199158262ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298KKKRKKK
29397KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574623.17e-40ethylene-responsive transcription factor ERF109
TrEMBLA0A2G9GYP83e-39A0A2G9GYP8_9LAMI; Uncharacterized protein
STRINGBRADI3G38140.13e-39(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.15e-28related to AP2 6l