PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0168.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 320aa    MW: 35271 Da    PI: 7.825
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0168.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.8e-115599147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT  E++++++a +++  + Wk+I + +   +t  q++s+ qky
  Kaladp0022s0168.1.p 55 RESWTDIEHDKFLEALHLFDRD-WKKIEAFVS-SKTVIQIRSHAQKY 99
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.7950104IPR017930Myb domain
SuperFamilySSF466892.5E-1550105IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-1653102IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.5E-553105IPR009057Homeodomain-like
SMARTSM007173.5E-954102IPR001005SANT/Myb domain
PfamPF002491.4E-85599IPR001005SANT/Myb domain
CDDcd001676.34E-757100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVSVRTNSSS SKVQSELDPM DASMPGLSNS LQPPMDPEDM MSKKIRKPYV ISKSRESWTD  60
IEHDKFLEAL HLFDRDWKKI EAFVSSKTVI QIRSHAQKYF LKIQKNGMTE HVPPPRPKRK  120
AAHPYPQKAS KIAHMDFQMV GSIQPPAPPP QPGYALPSLS SMPSSSAEFS SWTRSSAPPL  180
DMSHISKDGG AILGATGASN FGCSSSNESS SRTWCTNMSN EPGNSDMPIR VMPDFAQVYN  240
FIGSVFDPNT SDHLQKLKTM DPINVETALL LMRNLAINLT SPEFEDHRHL LASYDVLPGK  300
GKAFDDLHTG IHQSAISTT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661807.11e-121PREDICTED: protein REVEILLE 6
SwissprotQ8H0W36e-94RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A438EH441e-120A0A438EH44_VITVI; Protein REVEILLE 6
STRINGVIT_15s0046g02260.t011e-120(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-75MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]