PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0022s0217.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 300aa    MW: 33983.1 Da    PI: 10.5274
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0022s0217.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix64.52.3e-2045130186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +Wt +e+  Li+a+++++ +l+rg+lk+++Weev+  + ++ g+   +++++qC++k+e+l+kr++++k+  ++r    ss +p+f  ++
  Kaladp0022s0217.1.p  45 QWTPEETTSLIQAYQDKWYSLKRGQLKAHQWEEVAVTVaARCGYdeaTKTSTQCRHKMEKLRKRFRAEKRKGGGR----SSAWPFFGFMD 130
                          7*********************************998864445543389********************999986....789****8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.34238106IPR017877Myb-like domain
PfamPF138378.4E-2244132No hitNo description
SMARTSM005952.3E-453134IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MAATPSPSSS PPTQPSESQS LLVKAAKPIL LAIPVQTQKK AQAVQWTPEE TTSLIQAYQD  60
KWYSLKRGQL KAHQWEEVAV TVAARCGYDE ATKTSTQCRH KMEKLRKRFR AEKRKGGGRS  120
SAWPFFGFMD RMERGPRPIS ARPVNMVRFQ NPGESGEEED CGDNHRRVSS RSRSINSLIM  180
KPHTIVNIYP GSPPPPSRAR KGAELAVYKD GEFELEEENG FGKKRLLLSG LAAEMRAFEQ  240
RIAWVENKKM EMMRDTQKMR MEMESKRLKM IHDSQAKIVE TIYNGGPLKK IKIRTTSDM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028126128.11e-67probable serine/threonine-protein kinase samkC
TrEMBLA0A498IXM82e-63A0A498IXM8_MALDO; Uncharacterized protein
STRINGXP_008382615.13e-64(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.17e-39Trihelix family protein