PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0022s0244.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Trihelix

Protein Properties

Length: 345aa MW: 39348.1 Da PI: 6.5164

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0022s0244.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	34	113	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li++rre+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k+ykk+k++ +++y+++le Kaladp0022s0244.1.p 34 WVQEETRCLINFRREVDSLFNTSKSNKHLWEQISIKMRDKGFDRSPTMCTDKWRNLLKEYKKLKHHHATT-----AKISYYKDLE 113 ******************************************************************9973.....4577999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.2E-4	26	92	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.177	26	90	IPR017877	Myb-like domain
SMART	SM00717	1.2E-4	30	92	IPR001005	SANT/Myb domain
CDD	cd12203	5.00E-27	32	97	No hit	No description
Pfam	PF13837	2.5E-19	33	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MMMEGAVSLA PAHQLLLGES SGDDKAPKKR AETWVQEETR CLINFRREVD SLFNTSKSNK 60 HLWEQISIKM RDKGFDRSPT MCTDKWRNLL KEYKKLKHHH ATTAKISYYK DLEDLMRDRT 120 SHTNAPLHSN KLLDSSSYIH FSHKAIEDAT LAFGHSEAGG HAKVNPESRL DHDSDPLAIN 180 TGETVVPNGV PPWNWRETAG SGEEQPTYDG RVISVKWGEY TRRIGIDGTT DAIKEAVKSA 240 FRLRTKRAFW LEDEYQIIRS IDRDMPLGNY TLHLDEGISI KVCLFDDAGR ITEEKTLYTE 300 DDFREYLQRR GLTGLRELNG YRSIDTLDDL GTGEVYHGVR MIGE*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MMMEGAVSLA PAHQLLLGES SGDDKAPKKR AETWVQEETR CLINFRREVD SLFNTSKSNK  60
HLWEQISIKM RDKGFDRSPT MCTDKWRNLL KEYKKLKHHH ATTAKISYYK DLEDLMRDRT  120
SHTNAPLHSN KLLDSSSYIH FSHKAIEDAT LAFGHSEAGG HAKVNPESRL DHDSDPLAIN  180
TGETVVPNGV PPWNWRETAG SGEEQPTYDG RVISVKWGEY TRRIGIDGTT DAIKEAVKSA  240
FRLRTKRAFW LEDEYQIIRS IDRDMPLGNY TLHLDEGISI KVCLFDDAGR ITEEKTLYTE  300
DDFREYLQRR GLTGLRELNG YRSIDTLDDL GTGEVYHGVR MIGE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	2e-40	28	111	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00666	PBM	Transfer from GSVIVG01007522001	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010250844.1	1e-166	PREDICTED: trihelix transcription factor GT-1
Swissprot	Q9FX53	1e-140	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A1U7ZBE5	1e-165	A0A1U7ZBE5_NELNU; trihelix transcription factor GT-1
STRING	XP_010250844.1	1e-166	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-131	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Kaladp0022s0244.1.p

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]