PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0032.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 250aa    MW: 27786.2 Da    PI: 9.9339
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.2e-1365116154
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r+  hn+ Er RR++iN+ ++ Lr+llP +  ++s+++s  +++ ++ +YI +L
  Kaladp0024s0032.1.p  65 RKLHHNASERHRRKKINELYSSLRSLLPAS--EQSRRMSIPTTVSRVLKYIPEL 116
                          6789*************************6..5******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-1662144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1163121No hitNo description
PROSITE profilePS5088814.98364116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1065116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-1365137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1070122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLSVSSSSSA AMFGWPLEKA VYSYNMNHGF YDHTGGELAA AAHTDRPGNF APDGDRIDGK  60
SGERRKLHHN ASERHRRKKI NELYSSLRSL LPASEQSRRM SIPTTVSRVL KYIPELREEV  120
ARMEKRKQVM SKKMDKVRES VSSLSSKSTG PGHHGQEVTG REEEAKAQHM TMENSNNRSS  180
VSTSQVADRE VVIQISTVRV SVSEILSSLE GDGFQLINAS SSESHGGRLF LNLHLLNFRV  240
DSYWIVSPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16378RRKLHHNASERHRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-36bHLH family protein