PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0221.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 220aa    MW: 25147.7 Da    PI: 9.5439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0221.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.5e-19119208198
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k +++s+v+ + +l lp +f+++h  k  e+ ++tlede+g++   ++    ++ +  l++GW++F+ +++L +gD +vF+l++ ++f
  Kaladp0024s0221.1.p 119 FVKPMSRSHVTGRFWLGLPQRFCKAHLPK--EDEMITLEDEDGNESPSNY--LANRTG--LSGGWRGFALDHELVDGDALVFQLIRPTKF 202
                          89************************533..4569***************..555444..*************************97777 PP

                          ..EEEEE- CS
                   B3  91 elvvkvfr 98 
                            +v ++r
  Kaladp0024s0221.1.p 203 --MVYIVR 208
                          ..999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.46E-25113210IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-21115209IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-28117208No hitNo description
PROSITE profilePS5086312.449119210IPR003340B3 DNA binding domain
SMARTSM010192.3E-25119210IPR003340B3 DNA binding domain
PfamPF023621.7E-17119208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVESATSNYE KLRRQRLKEN KKRMEELNLS KSLYAATPKP SPAKHRKPKS ARKEVDLFAV  60
RRSRRTAGKP RPDYKEGMCL MLSRGDLLNC VYASHESRLS AVKRAEQLES ELGFEYPCFV  120
KPMSRSHVTG RFWLGLPQRF CKAHLPKEDE MITLEDEDGN ESPSNYLANR TGLSGGWRGF  180
ALDHELVDGD ALVFQLIRPT KFMVYIVRVN EHENGDESN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11222RRQRLKENKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028070755.13e-88B3 domain-containing protein At3g19184
SwissprotQ1G3M38e-71Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLF6HQC15e-86F6HQC1_VITVI; Uncharacterized protein
STRINGVIT_03s0063g00620.t018e-87(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-73B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]