PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0024s0248.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 267aa MW: 29388.6 Da PI: 6.3117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0024s0248.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.7e-11	1	40	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++iN++f++Lr+l+P + +K + a+ L ++++Y+++Lq Kaladp0024s0248.1.p 1 RRSKINERFQRLRDLIPIS----EQKRDTASFLLEVIDYVQYLQ 40 9***************8....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00010	3.6E-8	1	40	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	1	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-13	1	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.389	1	39	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.13E-10	1	44	No hit	No description
SMART	SM00353	1.1E-4	1	45	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
RRSKINERFQ RLRDLIPISE QKRDTASFLL EVIDYVQYLQ GEVQKYEGPY QPWSAEPTKL 60 MPWRNNHWRT QSIAPQPLGN GVEAGYAPKF NDASQTPLLG HPHEFNESDA LSDPSGRAMD 120 QHPDLASSAM AMQTLAHHSQ NDRLLSHQLQ RPLSDAQSAD PSLAAGTFSQ PDGLMIEAGT 180 ISISSAYSQG LLNTLTDALQ RAGVDLSQAN ISVRIDLGKR ANRGPAALED YSNLPSTHPP 240 PSSSGGEDLE QAQKRLKTQR SREVQN*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514584.1	4e-87	transcription factor BIM2
Swissprot	Q9CAA4	1e-63	BIM2_ARATH; Transcription factor BIM2
TrEMBL	B9RLG5	9e-86	B9RLG5_RICCO; Uncharacterized protein
STRING	XP_002514584.1	1e-86	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	3e-66	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Kaladp0024s0248.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]