PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0287.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 638aa    MW: 72825.8 Da    PI: 7.871
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0287.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.91.2e-08465505239
                          SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkq 39 
                          ++W +eE ell ++v+++++g   +W+ I++++g+gR+  +
  Kaladp0024s0287.1.p 465 KPWGKEEIELLRKGVQKYPKGtsrRWEVISEYIGTGRSVDE 505
                          69**********************************99765 PP
2Myb_DNA-binding28.82.9e-09580624345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                           W++  ++ l++a k ++++   +W+++a  ++ g+t +qck ++ 
  Kaladp0024s0287.1.p 580 QWSAVQEKALIQALKTFPKEanqRWERVATAVP-GKTVNQCKKKFA 624
                          7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.7E-2192199IPR001623DnaJ domain
SuperFamilySSF465653.01E-2095204IPR001623DnaJ domain
SMARTSM002711.7E-1497172IPR001623DnaJ domain
CDDcd062574.34E-1298169IPR001623DnaJ domain
PROSITE profilePS5007617.95398180IPR001623DnaJ domain
PfamPF002261.1E-1798177IPR001623DnaJ domain
PRINTSPR006254.2E-9103121IPR001623DnaJ domain
PRINTSPR006254.2E-9121136IPR001623DnaJ domain
PRINTSPR006254.2E-9152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS512936.604462520IPR017884SANT domain
SMARTSM007171.9E-6463516IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-7463507IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-5465506IPR009057Homeodomain-like
PfamPF002492.1E-7465506IPR001005SANT/Myb domain
CDDcd001679.11E-5466506No hitNo description
PROSITE profilePS512939.369576631IPR017884SANT domain
SMARTSM007171.9E-8577629IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-9577624IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-5580623IPR009057Homeodomain-like
PfamPF002496.0E-8580623IPR001005SANT/Myb domain
CDDcd001672.19E-6581627No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MVPAKNTFRL ITYSEEIVNG EPIFVSSNCL PIKALKYEPA GHAFHEAAMR LIGFFEEEKD  60
EEVEEQKPCS EKEQYMPSSG SYSTKSKKKS GTDSKEQDHY ALLNLSHLRY LATEEQIRKS  120
YRETALKYHP DKQAALLLSE ETEAGNQAKK DEIEAHFKAV QEAYEVLIDP VKRRIYDSTD  180
EFDDEIPTDC APQDFFKVFG PAFMRNGRWS VAQPVPSLGD DDAPLKEVDD FYNFWYGFKS  240
WREFPHADEY DLEQAESRDH KRWMERQNAK LSEKARKEEY VRIRSLVDNA YKRDPRILRR  300
KEEEKAEKQR KKQAKYLAKQ LGEEKAAKEA EEEKHRKEAE DKRAAEANAL QKKAKEKEKK  360
LLRKERSRLR ALSAAVASQS QHNVTLDDME GLCMSLGMDD LKNLCDKMDG KETEDQAETL  420
RRILGHKAST EIDPQDEKKP LYHNGSVTQN GAVFLGGYGK KEKEKPWGKE EIELLRKGVQ  480
KYPKGTSRRW EVISEYIGTG RSVDEILKAT KSVLLQKPDS NKAFDSFLEK RKPSPSIQSP  540
LSTRDDVVDA TNGSSSTGVT EQKPERATAN GAPSSSDPDQ WSAVQEKALI QALKTFPKEA  600
NQRWERVATA VPGKTVNQCK KKFALLKESF RSKKSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919429720123Zuotin
5dje_B1e-1919429720123Zuotin
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A059BI980.0A0A059BI98_EUCGR; Uncharacterized protein
STRINGXP_010067661.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-122DnaJ domain ;Myb-like DNA-binding domain