PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0389.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family LBD
Protein Properties Length: 221aa    MW: 24003.2 Da    PI: 5.2597
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0389.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.8e-41541531100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C ++C lapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vye+ ar+rdPvyG++g i +lq+q+++l
  Kaladp0024s0389.1.p  54 PCAACKILRRRCDDKCLLAPYFPPSDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEGTARLRDPVYGCAGAICHLQRQVSEL 143
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +aela++++e
  Kaladp0024s0389.1.p 144 QAELAKAHAE 153
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.38853154IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-4154151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MESSSGKTAP PTLSITPTTF NSSLSSSSSP PLSHSSPSTL MLPPPQSQVI VMSPCAACKI  60
LRRRCDDKCL LAPYFPPSDP LKFTIAHRVF GASNIIKFLQ ELPESQRADA VSSMVYEGTA  120
RLRDPVYGCA GAICHLQRQV SELQAELAKA HAEILTIQVQ KENRLASICT DDDQDQPTTI  180
SYGQCADVNQ NDELYGVASC MDPSVRASNL ESLWHDLREF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-425315510112LOB family transfactor Ramosa2.1
5ly0_B4e-425315510112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010658441.17e-72PREDICTED: LOB domain-containing protein 1
SwissprotQ9LQR03e-66LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A218XRE11e-70A0A218XRE1_PUNGR; Uncharacterized protein
STRINGVIT_13s0019g03700.t013e-71(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-68LOB domain-containing protein 1