PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0460.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MIKC_MADS
Protein Properties Length: 356aa    MW: 39925.9 Da    PI: 6.2713
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.8e-28958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  Kaladp0024s0460.1.p  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                         79********************************************9997 PP
2K-box17.32e-07110175974
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                          + +++ e+lqqel  L+ +++  q+++R +  + L+  s+ eL+  e+++ + ++ i ++K++l+ 
  Kaladp0024s0460.1.p 110 AVNSNVEELQQELISLQHQLKIAQEKLRIYEPNPLDFSSMAELEACEKNILDIMSDISERKKQLMN 175
                          567899**********************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.758161IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.47E-37278No hitNo description
SuperFamilySSF554558.89E-30281IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-263859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLTRY INLPDRDRGG ISLNTEYLIT TLKTLRAEND VALQLANPGA VNSNVEELQQ  120
ELISLQHQLK IAQEKLRIYE PNPLDFSSMA ELEACEKNIL DIMSDISERK KQLMNVRNQH  180
CSNFDPSSYM QMYLDGQDGV PVSTTFDNEV INWLPKNESN SNPIFVGSDP SASSISMRNH  240
TSSTIYDPMS HGSEIAMDHK NMSVCHITNS TFEQMSPWHQ SYTSAELLTA FMSPSAFPQI  300
KEIGGPSMQP MMTGQQGEAT SSCQHHQATS AGENESATYD HHQPAQLPRH PIHGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-17170169MEF2 CHIMERA
6byy_B2e-17170169MEF2 CHIMERA
6byy_C2e-17170169MEF2 CHIMERA
6byy_D2e-17170169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652831.11e-144PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM465e-90AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLD7SW171e-143D7SW17_VITVI; Uncharacterized protein
STRINGVIT_07s0031g01140.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.12e-92AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]